A6LF11 (A6LF11_PARD8) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Glycoside hydrolase family 23 EMBL ABR44275.1

Gene names

Ordered Locus Names:

BDI_2556

Organism

Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) [Complete proteome] [HAMAP]

Taxonomic identifier

435591 [NCBI]

Taxonomic lineage

Bacteria › Bacteroidetes › Bacteroidia › Bacteroidales › Porphyromonadaceae › Parabacteroides

Protein attributes

Sequence length	518 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Hydrolase EMBL ABR44275.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	cell wall macromolecule catabolic process Inferred from electronic annotation. Source: InterPro peptidoglycan metabolic process Inferred from electronic annotation. Source: InterPro
Cellular component	membrane Inferred from electronic annotation. Source: InterPro
Molecular function	hydrolase activity Inferred from electronic annotation. Source: UniProtKB-KW lytic transglycosylase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	A6LF11 [UniParc]. Last modified July 24, 2007. Version 1. Checksum: 8999DCC78C7CB1B7	FASTA	518	57,795
	10 20 30 40 50 60 MKRYLLALIC LNCLVSLVYA QEETRIEEKD TLSSLESEVG LIPESLDANV DSLLRTWHVQ 70 80 90 100 110 120 YFSKREDFCH DDDENVYFPD SVYIDRLSRL PSVIALPYNN IVRDCIDLYA ERKRNLVRYM 130 140 150 160 170 180 LGMADFYFPI IEQVLDEHGL PIELKYLAVV ESALNPVALS RVGACGLWQF MLPTGKSYGL 190 200 210 220 230 240 EINSLVDERR DPLKATEAAC KYFKDMYAIY GDWNLVLASY NCGPGNVNKA IRRSGGKTDF 250 260 270 280 290 300 WDIFPYLPKE TRSYVPLFIA ANYVMNYYCE HNICPMQTSL PLATDTVMVN NALHLQQVSD 310 320 330 340 350 360 LLQVDIETLR ALNPQYKRDI VPGNTRPSVL KLPAAETYAF IDKEDTVYTH RIEELLANCI 370 380 390 400 410 420 SANNSNGSLP SGATREKITH VVLSGENLYT IANRYGVTAK DIRKWNGLGS NRVAKGKRLR 430 440 450 460 470 480 LYVDNGGVAF ASATKTPVKS TTVTAKSTAT TTKKSASAAT KQIASANKDF VSYKVKSGDS 490 500 510 LYSISKKYPG VTASSLQKVN GLSSPDIRPG QVLKIPVG

References

[1]

"Evolution of symbiotic bacteria in the distal human intestine." Xu J., Mahowald M.A., Ley R.E., Lozupone C.A., Hamady M., Martens E.C., Henrissat B., Coutinho P.M., Minx P., Latreille P., Cordum H., Van Brunt A., Kim K., Fulton R.S., Fulton L.A., Clifton S.W., Wilson R.K., Knight R.D., Gordon J.I. PLoS Biol. 5:1574-1586(2007) [PubMed: 17579514] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000140 Genomic DNA. Translation: ABR44275.1.
RefSeq	YP_001303897.1. NC_009615.1.
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	A6LF11.
Protein family/group databases
CAZy	GH23. Glycoside Hydrolase Family 23.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	5307705.
GenomeReviews	Gene locus BDI_2556 in contig CP000140_GR.
KEGG	pdi:BDI_2556.
PATRIC	22848330. VBIParDis29947_2534.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0741.
HOGENOM	HBG405807.
OMA	YNEHNIR.
Enzyme and pathway databases
BioCyc	PDIS435591:BDI_2556-MONOMER.
Family and domain databases
InterPro	IPR023346. Lysozyme-like_dom. IPR008258. Lytic_TGlycosylase-like_cat. IPR018392. Peptidoglycan-bd_lysin. IPR002482. Peptidoglycan-bd_Lysin_subgr. IPR000189. Transglyc_AS. [Graphical view]
KO	K08307.
Pfam	PF01476. LysM. 2 hits. PF01464. SLT. 1 hit. [Graphical view]
SMART	SM00257. LysM. 2 hits. [Graphical view]
SUPFAM	SSF53955. SSF53955. 1 hit.
PROSITE	PS00922. TRANSGLYCOSYLASE. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

A6LF11_PARD8

Accession

Primary (citable) accession number: A6LF11

Entry history

Integrated into UniProtKB/TrEMBL:	July 24, 2007
Last sequence update:	July 24, 2007
Last modified:	December 14, 2011
This is version 29 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)