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A6LDS0 (PYRF_PARD8) Reviewed, UniProtKB/Swiss-Prot

Last modified May 14, 2014. Version 52. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Orotidine 5'-phosphate decarboxylase

EC=4.1.1.23
Alternative name(s):
OMP decarboxylase
Short name=OMPDCase
Short name=OMPdecase
Gene names
Name:pyrF
Ordered Locus Names:BDI_2103
OrganismParabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) [Complete proteome] [HAMAP]
Taxonomic identifier435591 [NCBI]
Taxonomic lineageBacteriaBacteroidetesBacteroidiaBacteroidalesPorphyromonadaceaeParabacteroides

Protein attributes

Sequence length280 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Ontologies

Keywords
   Biological processPyrimidine biosynthesis
   Molecular functionDecarboxylase
Lyase
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_process'de novo' UMP biosynthetic process

Inferred from electronic annotation. Source: UniProtKB-UniPathway

'de novo' pyrimidine nucleobase biosynthetic process

Inferred from electronic annotation. Source: InterPro

   Molecular_functionorotidine-5'-phosphate decarboxylase activity

Inferred from electronic annotation. Source: UniProtKB-HAMAP

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 280280Orotidine 5'-phosphate decarboxylase HAMAP-Rule MF_01215
PRO_1000138957

Sites

Active site961Proton donor By similarity

Sequences

Sequence LengthMass (Da)Tools
A6LDS0 [UniParc].

Last modified July 24, 2007. Version 1.
Checksum: D234180F1706413F

FASTA28031,263
        10         20         30         40         50         60 
MNKQQLFENI KKKQSFLCVG LDTDIKKIPQ HLLSEEDPIF AFNKAIIDAT ADYCVAYKPN 

        70         80         90        100        110        120 
LAFYESLGTK GMMAFEKTVA YLRENYPDQF IIADAKRGDI GNTSEMYARS FFDHIKVDAV 

       130        140        150        160        170        180 
TVAPYMGEDS VKPFLIYPEA WVILLALTSN KGSHDFQMTE DANGERLFEK VLKKSQEWAN 

       190        200        210        220        230        240 
DEQMMYVVGA TQGKMFLDIR KQAPNHFLLV PGVGAQGGSL AEVAQYGMND QCGLLVNSSR 

       250        260        270        280 
AIIYADKTEA FANVAREAAH AVQKEMAGYL HDKGIIPCKA 

« Hide

References

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000140 Genomic DNA. Translation: ABR43834.1.
RefSeqYP_001303456.1. NC_009615.1.

3D structure databases

ProteinModelPortalA6LDS0.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING435591.BDI_2103.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABR43834; ABR43834; BDI_2103.
GeneID5307252.
KEGGpdi:BDI_2103.
PATRIC22847414. VBIParDis29947_2088.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0284.
HOGENOMHOG000245747.
KOK01591.
OMACRTSNAG.
OrthoDBEOG6DZF33.

Enzyme and pathway databases

BioCycPDIS435591:GCNH-2097-MONOMER.
UniPathwayUPA00070; UER00120.

Family and domain databases

Gene3D3.20.20.70. 1 hit.
HAMAPMF_01215. OMPdecase_type2.
InterProIPR013785. Aldolase_TIM.
IPR011995. OMPdecase_type-2.
IPR001754. OMPdeCOase_dom.
IPR011060. RibuloseP-bd_barrel.
[Graphical view]
PfamPF00215. OMPdecase. 1 hit.
[Graphical view]
SMARTSM00934. OMPdecase. 1 hit.
[Graphical view]
SUPFAMSSF51366. SSF51366. 1 hit.
TIGRFAMsTIGR02127. pyrF_sub2. 1 hit.
ProtoNetSearch...

Entry information

Entry namePYRF_PARD8
AccessionPrimary (citable) accession number: A6LDS0
Entry history
Integrated into UniProtKB/Swiss-Prot: April 14, 2009
Last sequence update: July 24, 2007
Last modified: May 14, 2014
This is version 52 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

PATHWAY comments

Index of metabolic and biosynthesis pathways