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Protein
Submitted name:

Sensory box/ggdef family protein

Gene

A79_5898

Organism
Vibrio parahaemolyticus serotype O3:K6 (strain AQ3810)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Names & Taxonomyi

Protein namesi
Submitted name:
Sensory box/ggdef family proteinImported
Gene namesi
ORF Names:A79_5898Imported
OrganismiVibrio parahaemolyticus serotype O3:K6 (strain AQ3810)Imported
Taxonomic identifieri419109 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeVibrio
Proteomesi
  • UP000004323 Componenti: Unassembled WGS sequence

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei155 – 174HelicalSequence analysisAdd BLAST20
Transmembranei321 – 342HelicalSequence analysisAdd BLAST22

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Membrane

Family & Domainsi

Keywords - Domaini

Transmembrane, Transmembrane helixSequence analysis

Sequencei

Sequence statusi: Fragment.

A6B9S8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MIRFELGNQI CVCLSENDIS LEINNTLHHA IPVSSNEYAI LSTIATYGSL
60 70 80 90 100
NAPISQRVIE RKITQHYKMA LPENGFKNAV AALRKKFRKL TEDHVSPTRN
110 120 130 140 150
IIENIHRTGY FIPFTMLHTH QSGIYQQKRI NQHTKNSVRK ALRICLRNKR
160 170 180 190 200
IYTDIAWVLL VTTAIFFSVC YYAINSIVKH NYLDSALDIA DSLSQMSCYA
210 220 230 240 250
DEDQLKGLFD NVKLVESSMM LDRFNIRCLV TPEAVVPVSQ KAFNEWNDNS
260 270 280 290 300
NYTTQSFDIN NATILVRVKN INLQNNVESH ISRFFLSGMK LYTNTGTSFE
310 320 330 340 350
IGNTNGRYFH YQIKDTGYKE VYYISGPLKS IILLSLFFLV ILRHRSLQAF
360 370 380 390
ITYLFAIREF HIKLEPIYNT STQQNIHYEA LSRFKVKNTQ R
Length:391
Mass (Da):45,269
Last modified:July 24, 2007 - v1
Checksum:iFE307AC327196669
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Non-terminal residuei391Imported1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AAWQ01000280 Genomic DNA. Translation: EDM57075.1.
RefSeqiWP_005461286.1. NZ_DS180222.1.

Genome annotation databases

EnsemblBacteriaiEDM57075; EDM57075; A79_5898.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AAWQ01000280 Genomic DNA. Translation: EDM57075.1.
RefSeqiWP_005461286.1. NZ_DS180222.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiEDM57075; EDM57075; A79_5898.

Family and domain databases

ProtoNetiSearch...

Entry informationi

Entry nameiA6B9S8_VIBPQ
AccessioniPrimary (citable) accession number: A6B9S8
Entry historyi
Integrated into UniProtKB/TrEMBL: July 24, 2007
Last sequence update: July 24, 2007
Last modified: December 9, 2015
This is version 13 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.Imported

Keywords - Technical termi

Complete proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.