Skip Header

You are using a version of Internet Explorer that may not display all features of this website. Please upgrade to a modern browser.
Contribute Send feedback
Read comments (?) or add your own

A5ZY13 (A5ZY13_9FIRM) Unreviewed, UniProtKB/TrEMBL

Last modified October 16, 2013. Version 30. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein names
EC=3.2.1.- EMBL EDM85535.1
Gene names
ORF Names:RUMOBE_03919 EMBL EDM85535.1
OrganismRuminococcus obeum ATCC 29174 EMBL EDM85535.1
Taxonomic identifier411459 [NCBI]
Taxonomic lineageBacteriaFirmicutesClostridiaClostridialesLachnospiraceaeBlautia

Protein attributes

Sequence length663 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

General annotation (Comments)

Caution

The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data. EMBL EDM85535.1

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Binding site1971Glucose PDB 3MKK
Binding site4041Glucose PDB 3MKK
Binding site4201Glucose PDB 3MKK
Binding site4781Glucose PDB 3MKK

Sequences

Sequence LengthMass (Da)Tools
A5ZY13 [UniParc].

Last modified July 24, 2007. Version 1.
Checksum: 8FAA32F7735D97E8

FASTA66377,083
        10         20         30         40         50         60 
MIRKYRYGAP FDTEALTEKI ETAEEAFPYG EISQKEGFAF TYIMDEDDIV YGLGESNRGI 

        70         80         90        100        110        120 
NKRGYCYISN CTDDPIHTED KRSLYGAHNF IIVSGKTTFG LFFDYPSKLT FDIGYTRMDT 

       130        140        150        160        170        180 
LKVSCENADL DIYVIEGENA YDIVKQFRRV IGRSYIPPKF AFGFGQSRWG YTTKEDFRAV 

       190        200        210        220        230        240 
AKGYRENHIP IDMIYMDIDY MQDFKDFTVN EKNFPDFPEF VKEMKDQELR LIPIIDAGVK 

       250        260        270        280        290        300 
VEKGYEVYEE GVKNNYFCKR EDGSDFVAAV WPGDTHFPDM LNPEARKWFG DKYRFLIDQG 

       310        320        330        340        350        360 
IEGFWNDMNE PAIFYSSEGL AEAKEFAGEF AKDTEGKIHP WAMQAKMKDI VNSPEDYKRF 

       370        380        390        400        410        420 
YHNVNGKKIR HDKVHNLFGY NMTRAAGEAF ERIDPEKRFL MFSRSSYIGM HRYGGIWMGD 

       430        440        450        460        470        480 
NKSWWSHILL NLKMLPSLNM CGFMYTGADL GGFGDDTTRD LLLRFLALGV FTPLMRDHAA 

       490        500        510        520        530        540 
EGTREQECYQ FENIEDFRSV INARYRLVPY LYSEYMKAAL NDDMYFKPLG FVYPDDKMAI 

       550        560        570        580        590        600 
RVEDQLMLGN EIMIAPVYEQ NARGRYVYLP EEMKFIKFMP DGSISEEVLE KGVHYVDVAL 

       610        620        630        640        650        660 
NEVPLFIRSG KCIPVAEAAE CVKDIDTENM QLIGYEGSSY TLYEDDGIHK DYDKKENYRV 


LTK 

« Hide

References

[1]Fulton L., Clifton S., Fulton B., Xu J., Minx P., Pepin K.H., Johnson M., Thiruvilangam P., Bhonagiri V., Nash W.E., Mardis E.R., Wilson R.K.
Submitted (MAR-2007) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: ATCC 29174 EMBL EDM85535.1.
[2]"Draft genome sequence of Ruminococcus obeum (ATCC 29174)."
Sudarsanam P., Ley R., Guruge J., Turnbaugh P.J., Mahowald M., Liep D., Gordon J.
Submitted (APR-2007) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: ATCC 29174 EMBL EDM85535.1.
[3]"Novel ?-glucosidase from human gut microbiome: substrate specificities and their switch."
Tan K., Tesar C., Wilton R., Keigher L., Babnigg G., Joachimiak A.
FASEB J. 24:3939-3949(2010) [PubMed] [Europe PMC] [Abstract]
Cited for: X-RAY CRYSTALLOGRAPHY (1.91 ANGSTROMS) IN COMPLEX WITH GLUCOSE.
[4]"The crystal structure of the The crystal structure of the D420A mutant of the alpha-glucosidase (FAMILY 31) from Ruminococcus obeum ATCC 29174."
Tan K., Tesar C., Wilton R., Keigher L., Babnigg G., Joachimiak A.
Submitted (JUL-2010) to the PDB data bank
Cited for: X-RAY CRYSTALLOGRAPHY (1.57 ANGSTROMS).
[5]"THE CRYSTAL STRUCTURE OF THE W169Y mutant of ALPHA-GLUCOSIDASE (FAMILY 31) from RUMINOCOCCUS OBEUM ATCC 29174."
Tan K., Tesar C., Wilton R., Keigher L., Babnigg G., Joachimiak A.
Submitted (JUL-2010) to the PDB data bank
Cited for: X-RAY CRYSTALLOGRAPHY (2.06 ANGSTROMS).
[6]"The crystal structure of the D307A mutant of alpha-Glucosidase (FAMILY 31) from Ruminococcus obeum ATCC 29174 in complex with acarbose."
Tan K., Tesar C., Wilton R., Keigher L., Babnigg G., Joachimiak A.
Submitted (NOV-2010) to the PDB data bank
Cited for: X-RAY CRYSTALLOGRAPHY (1.99 ANGSTROMS).
[7]"The crystal structure of the W169Y mutant of alpha-glucosidase (gh31 family) from Ruminococcus obeum atcc 29174 in complex with acarbose."
Tan K., Tesar C., Keigher L., Babnigg G., Joachimiak A.
Submitted (NOV-2010) to the PDB data bank
Cited for: X-RAY CRYSTALLOGRAPHY (2.17 ANGSTROMS).

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AAVO02000029 Genomic DNA. Translation: EDM85535.1.

3D structure databases

PDBe
RCSB PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
3M46X-ray2.66A/B1-663[»]
3M6DX-ray2.90A/B1-663[»]
3MKKX-ray1.91A/B1-663[»]
3N04X-ray2.02A/B1-663[»]
3NSXX-ray1.57A/B1-663[»]
3NUKX-ray2.06A/B1-663[»]
3PHAX-ray2.17A/B/C/D1-663[»]
3POCX-ray1.99A/B1-663[»]
ModBaseSearch...
MobiDBSearch...

Protein family/group databases

CAZyGH31. Glycoside Hydrolase Family 31.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaEDM85535; EDM85535; RUMOBE_03919.
PATRIC29798544. VBIRumObe16879_1928.

Family and domain databases

InterProIPR011013. Gal_mutarotase_SF_dom.
IPR000322. Glyco_hydro_31.
IPR025887. Glyco_hydro_31_N_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PfamPF13802. Gal_mutarotas_2. 1 hit.
PF01055. Glyco_hydro_31. 1 hit.
[Graphical view]
SUPFAMSSF51445. SSF51445. 2 hits.
SSF74650. SSF74650. 1 hit.
PROSITEPS00129. GLYCOSYL_HYDROL_F31_1. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

EvolutionaryTraceA5ZY13.

Entry information

Entry nameA5ZY13_9FIRM
AccessionPrimary (citable) accession number: A5ZY13
Entry history
Integrated into UniProtKB/TrEMBL: July 24, 2007
Last sequence update: July 24, 2007
Last modified: October 16, 2013
This is version 30 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)