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Protein
Submitted name:

Cyclic nucleotide-binding domain protein

Gene

RUMOBE_03498

Organism
Blautia obeum ATCC 29174
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulationSAAS annotation

Keywords - Ligandi

DNA-bindingSAAS annotation

Names & Taxonomyi

Protein namesi
Submitted name:
Cyclic nucleotide-binding domain proteinImported
Gene namesi
ORF Names:RUMOBE_03498Imported
OrganismiBlautia obeum ATCC 29174Imported
Taxonomic identifieri411459 [NCBI]
Taxonomic lineageiBacteriaFirmicutesClostridiaClostridialesLachnospiraceaeBlautia
Proteomesi
  • UP000006002 Componenti: Unassembled WGS sequence

PTM / Processingi

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Disulfide bondi68 ↔ 108Combined sources

Interactioni

Protein-protein interaction databases

STRINGi411459.RUMOBE_03498.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
3DV8X-ray2.55A26-244[»]
ProteinModelPortaliA5ZWV4.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiA5ZWV4.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini170 – 23667HTH crp-type DNA-bindingInterPro annotationAdd
BLAST

Sequence similaritiesi

Contains HTH crp-type DNA-binding domain.SAAS annotation

Phylogenomic databases

eggNOGiENOG4108RBZ. Bacteria.
COG0664. LUCA.
OrthoDBiPOG091H0447.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
2.60.120.10. 1 hit.
InterProiIPR018490. cNMP-bd-like.
IPR000595. cNMP-bd_dom.
IPR012318. HTH_CRP.
IPR014710. RmlC-like_jellyroll.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00027. cNMP_binding. 1 hit.
PF13545. HTH_Crp_2. 1 hit.
[Graphical view]
PRINTSiPR00034. HTHCRP.
SMARTiSM00419. HTH_CRP. 1 hit.
[Graphical view]
SUPFAMiSSF46785. SSF46785. 1 hit.
SSF51206. SSF51206. 1 hit.
PROSITEiPS51063. HTH_CRP_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A5ZWV4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAYASYIIDA SKKSKYTMFV KEITVMNFEN CFPLWNDLNT AQKKIISDNL
60 70 80 90 100
ITQYVKKGTI IHNGNLDCTG LLLVKSGQLR TYILSDEGRE ITLYRLFDMD
110 120 130 140 150
MCLLSASCIM RSIQFEVTIE AEKDTDLWII PAEIYKGIMK ESAPVANYTN
160 170 180 190 200
ELMATRFSDV MWLIEQIMWK SLDKRVASFL LEETSIEGTN ELKITHETIA
210 220 230 240
NHLGSHREVI TRMLRYFQGE GLVKLSRGKI TILDPKRLET LQRS
Length:244
Mass (Da):28,127
Last modified:July 24, 2007 - v1
Checksum:i9C9F885F71872786
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AAVO02000021 Genomic DNA. Translation: EDM85982.1.

Genome annotation databases

EnsemblBacteriaiEDM85982; EDM85982; RUMOBE_03498.
PATRICi29794717. VBIRumObe16879_0064.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AAVO02000021 Genomic DNA. Translation: EDM85982.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
3DV8X-ray2.55A26-244[»]
ProteinModelPortaliA5ZWV4.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi411459.RUMOBE_03498.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiEDM85982; EDM85982; RUMOBE_03498.
PATRICi29794717. VBIRumObe16879_0064.

Phylogenomic databases

eggNOGiENOG4108RBZ. Bacteria.
COG0664. LUCA.
OrthoDBiPOG091H0447.

Miscellaneous databases

EvolutionaryTraceiA5ZWV4.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
2.60.120.10. 1 hit.
InterProiIPR018490. cNMP-bd-like.
IPR000595. cNMP-bd_dom.
IPR012318. HTH_CRP.
IPR014710. RmlC-like_jellyroll.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00027. cNMP_binding. 1 hit.
PF13545. HTH_Crp_2. 1 hit.
[Graphical view]
PRINTSiPR00034. HTHCRP.
SMARTiSM00419. HTH_CRP. 1 hit.
[Graphical view]
SUPFAMiSSF46785. SSF46785. 1 hit.
SSF51206. SSF51206. 1 hit.
PROSITEiPS51063. HTH_CRP_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiA5ZWV4_9FIRM
AccessioniPrimary (citable) accession number: A5ZWV4
Entry historyi
Integrated into UniProtKB/TrEMBL: July 24, 2007
Last sequence update: July 24, 2007
Last modified: September 7, 2016
This is version 57 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.Imported

Keywords - Technical termi

3D-structureCombined sources, Complete proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.