A5WS05 (A5WS05_MYCTF) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
SsrA-binding protein HAMAP MF_00023

Gene names

Name:	smpB HAMAP MF_00023
Ordered Locus Names:	TBFG_13117

Organism

Mycobacterium tuberculosis (strain F11) [Complete proteome] [HAMAP]

Taxonomic identifier

336982 [NCBI]

Taxonomic lineage

Bacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Corynebacterineae › Mycobacteriaceae › Mycobacterium › Mycobacterium tuberculosis complex

Protein attributes

Sequence length	160 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Binds specifically to the SsrA RNA (tmRNA) and is required for stable association of SsrA with ribosomes By similarity. HAMAP MF_00023
Subcellular location	Cytoplasm By similarity HAMAP MF_00023.
Sequence similarities	Belongs to the SmpB family. HAMAP MF_00023

Ontologies

Keywords
Cellular component	Cytoplasm HAMAP MF_00023
Ligand	RNA-binding HAMAP MF_00023
Technical term	Complete proteome
Gene Ontology (GO)
Cellular component	cytoplasm Inferred from electronic annotation. Source: UniProtKB-SubCell
Molecular function	RNA binding Inferred from electronic annotation. Source: HAMAP
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	A5WS05 [UniParc]. Last modified July 28, 2009. Version 1. Checksum: 949F6327A03ACCD3	FASTA	160	18,230
	10 20 30 40 50 60 MSKSSRGGRQ IVASNRKARH NYSIIEVFEA GVALQGTEVK SLREGQASLA DSFATIDDGE 70 80 90 100 110 120 VWLRNAHIPE YRHGSWTNHE PRRNRKLLLH RRQIDTLVGK IREGNFALVP LSLYFAEGKV 130 140 150 160 KVELALARGK QARDKRQDMA RRDAQREVLR ELGRRAKGMT

References

[1]

"The complete genome sequence of Mycobacterium tuberculosis F11." Birren B., Lander E., Galagan J., Devon K., Nusbaum C., Borowsky M.L., Grabherr M., Mauceli E., Brockman W., Young S., LaButti K., Pushparaj V., Sykes S., Baldwin J., Fitzgerald M., Bloom T., Zimmer A., Settipalli S. , Shea T., Arachchi H., Macdonald P., Abouelleil A., Lui A., Priest M., Berlin A., Gearin G., Brown A., Aftuck L., Bessette D., Allen N., Lubonja R., Lokyitsang T., Matthews C., Dunbar C., Benamara M., Nguyen T., Negash T., DeCaprio D., Crawford M., Koehrsen M., Engels R., Montgomery P., Pearson M., Howarth C., Kodira C., Zeng Q., Yandava C., O'Leary S., Alvarado L., Victor T., Murray M. Submitted (APR-2007) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000717 Genomic DNA. Translation: ABR07444.1.
RefSeq	YP_001289046.1. NC_009565.1.
3D structure databases
ProteinModelPortal	A5WS05.
SMR	A5WS05. Positions 11-130.
ModBase	Search...
Protein-protein interaction databases
STRING	A5WS05.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	5223806.
GenomeReviews	Gene locus TBFG_13117 in contig CP000717_GR.
KEGG	mtf:TBFG_13117.
PATRIC	18137691. VBIMycTub9078_3480.
Organism-specific databases
CMR	Search...
Phylogenomic databases
OMA	EKYEAGI.
ProtClustDB	PRK05422.
Family and domain databases
HAMAP	MF_00023. SmpB. [Tree]
InterPro	IPR023620. SmpB. IPR000037. SsrA-bd_prot. IPR020081. SsrA-bd_prot_CS. [Graphical view]
Gene3D	G3DSA:2.40.280.10. SmpB. 1 hit.
KO	K03664.
Pfam	PF01668. SmpB. 1 hit. [Graphical view]
ProDom	PD004488. SmpB. 1 hit. [Graphical view] [Entries sharing at least one domain]
SUPFAM	SSF74982. SmpB. 1 hit.
TIGRFAMs	TIGR00086. SmpB. 1 hit.
PROSITE	PS01317. SSRP. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

A5WS05_MYCTF

Accession

Primary (citable) accession number: A5WS05

Entry history

Integrated into UniProtKB/TrEMBL:	July 28, 2009
Last sequence update:	July 28, 2009
Last modified:	December 14, 2011
This is version 20 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)