A5WQ57 (A5WQ57_MYCTF) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
50S ribosomal protein L21 HAMAP MF_01363 RuleBase RU000562

Gene names

Name:	rplU HAMAP MF_01363
Ordered Locus Names:	TBFG_12469

Organism

Mycobacterium tuberculosis (strain F11) [Complete proteome] [HAMAP]

Taxonomic identifier

336982 [NCBI]

Taxonomic lineage

Bacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Corynebacterineae › Mycobacteriaceae › Mycobacterium › Mycobacterium tuberculosis complex

Protein attributes

Sequence length	104 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	This protein binds to 23S rRNA in the presence of protein L20 By similarity. HAMAP MF_01363 RuleBase RU000562
Subunit structure	Part of the 50S ribosomal subunit. Contacts protein L20 By similarity. HAMAP MF_01363
Sequence similarities	Belongs to the ribosomal protein L21P family. HAMAP MF_01363 RuleBase RU000562

Ontologies

Keywords
Ligand	RNA-binding rRNA-binding HAMAP MF_01363 RuleBase RU000562
Molecular function	Ribonucleoprotein Ribosomal protein HAMAP MF_01363 RuleBase RU000562 EMBL ABR06796.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	translation Inferred from electronic annotation. Source: HAMAP
Cellular component	ribosome Inferred from electronic annotation. Source: UniProtKB-KW
Molecular function	rRNA binding Inferred from electronic annotation. Source: HAMAP structural constituent of ribosome Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	A5WQ57 [UniParc]. Last modified July 28, 2009. Version 1. Checksum: AB6D8A91B7D5870A	FASTA	104	11,151
	10 20 30 40 50 60 MMATYAIVKT GGKQYKVAVG DVVKVEKLES EQGEKVSLPV ALVVDGATVT TDAKALAKVA 70 80 90 100 VTGEVLGHTK GPKIRIHKFK NKTGYHKRQG HRQQLTVLKV TGIA

References

[1]

"The complete genome sequence of Mycobacterium tuberculosis F11." Birren B., Lander E., Galagan J., Devon K., Nusbaum C., Borowsky M.L., Grabherr M., Mauceli E., Brockman W., Young S., LaButti K., Pushparaj V., Sykes S., Baldwin J., Fitzgerald M., Bloom T., Zimmer A., Settipalli S. , Shea T., Arachchi H., Macdonald P., Abouelleil A., Lui A., Priest M., Berlin A., Gearin G., Brown A., Aftuck L., Bessette D., Allen N., Lubonja R., Lokyitsang T., Matthews C., Dunbar C., Benamara M., Nguyen T., Negash T., DeCaprio D., Crawford M., Koehrsen M., Engels R., Montgomery P., Pearson M., Howarth C., Kodira C., Zeng Q., Yandava C., O'Leary S., Alvarado L., Victor T., Murray M. Submitted (APR-2007) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000717 Genomic DNA. Translation: ABR06796.1.
RefSeq	YP_001288398.1. NC_009565.1.
3D structure databases
ProteinModelPortal	A5WQ57.
ModBase	Search...
Protein-protein interaction databases
STRING	A5WQ57.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	5223146.
GenomeReviews	Gene locus TBFG_12469 in contig CP000717_GR.
KEGG	mtf:TBFG_12469.
PATRIC	18136217. VBIMycTub9078_2754.
Organism-specific databases
CMR	Search...
Phylogenomic databases
OMA	IKVEQIA.
ProtClustDB	PRK05573.
Family and domain databases
HAMAP	MF_01363. Ribosomal_L21. [Tree]
InterPro	IPR001787. Ribosomal_L21. IPR018258. Ribosomal_L21_CS. [Graphical view]
KO	K02888.
PANTHER	PTHR21349. Ribosomal_L21p. 1 hit.
Pfam	PF00829. Ribosomal_L21p. 1 hit. [Graphical view]
TIGRFAMs	TIGR00061. L21. 1 hit.
PROSITE	PS01169. RIBOSOMAL_L21. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

A5WQ57_MYCTF

Accession

Primary (citable) accession number: A5WQ57

Entry history

Integrated into UniProtKB/TrEMBL:	July 28, 2009
Last sequence update:	July 28, 2009
Last modified:	December 14, 2011
This is version 19 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)