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A5WKW0

- A5WKW0_MYCTF

UniProt

A5WKW0 - A5WKW0_MYCTF

Protein
Submitted name:

ATP dependent DNA ligase LigD

Gene

TBFG_10956

Organism
Mycobacterium tuberculosis (strain F11)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 35 (01 Oct 2014)
      Sequence version 1 (28 Jul 2009)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro
    3. DNA primase activity Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciMTUB336982:GH7I-970-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    ATP dependent DNA ligase LigDImported
    Submitted name:
    Hypothetical ATP dependent DNA ligaseImported
    Gene namesi
    Ordered Locus Names:TBFG_10956Imported
    ORF Names:P426_00976Imported
    OrganismiMycobacterium tuberculosis (strain F11)Imported
    Taxonomic identifieri336982 [NCBI]
    Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesCorynebacterineaeMycobacteriaceaeMycobacteriumMycobacterium tuberculosis complex
    ProteomesiUP000000660: Chromosome

    Interactioni

    Protein-protein interaction databases

    STRINGi336982.TBFG_10956.

    Structurei

    3D structure databases

    ProteinModelPortaliA5WKW0.
    SMRiA5WKW0. Positions 2-289, 453-759.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    eggNOGiCOG3285.
    HOGENOMiHOG000222509.
    KOiK01971.
    OMAiSKGIHLY.
    OrthoDBiEOG661H49.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    A5WKW0-1 [UniParc]FASTAAdd to Basket

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    MGSASEQRVT LTNADKVLYP ATGTTKSDIF DYYAGVAEVM LGHIAGRPAT    50
    RKRWPNGVDQ PAFFEKQLAL SAPPWLSRAT VAHRSGTTTY PIIDSATGLA 100
    WIAQQAALEV HVPQWRFVAE PGSGELNPGP ATRLVFDLDP GEGVMMAQLA 150
    EVARAVRDLL ADIGLVTFPV TSGSKGLHLY TPLDEPVSSR GATVLAKRVA 200
    QRLEQAMPAL VTSTMTKSLR AGKVFVDWSQ NSGSKTTIAP YSLRGRTHPT 250
    VAAPRTWAEL DDPALRQLSY DEVLTRIARD GDLLERLDAD APVADRLTRY 300
    RRMRDASKTP EPIPTAKPVT GDGNTFVIQE HHARRPHYDF RLERDGVLVS 350
    WAVPKNLPDN TSVNHLAIHT EDHPLEYATF EGAIPSGEYG AGKVIIWDSG 400
    TYDTEKFHDD PHTGEVIVNL HGGRISGRYA LIRTNGDRWL AHRLKNQKDQ 450
    KVFEFDNLAP MLATHGTVAG LKASQWAFEG KWDGYRLLVE ADHGAVRLRS 500
    RSGRDVTAEY PQLRAFAEDL ADHHVVLDGE AVVLDSSGVP SFSQMQNRGR 550
    DTRVEFWAFD LLYLDGRALL GTRYQDRRKL LETLANATSL TVPELLPGDG 600
    AQAFACSRKH GWEGVIAKRR DSRYQPGRRC ASWVKDKHWN TQEVVIGGWR 650
    AGEGGRSSGV GSLLMGIPGP GGLQFAGRVG TGLSERELAN LKEMLAPLHT 700
    DESPFDVPLP ARDAKGITYV KPALVAEVRY SEWTPEGRLR QSSWRGLRPD 750
    KKPSEVVRE 759
    Length:759
    Mass (Da):83,659
    Last modified:July 28, 2009 - v1
    Checksum:iDE1B59E33CEE068C
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000717 Genomic DNA. Translation: ABR05299.1.
    JLDC01000002 Genomic DNA. Translation: KBJ37862.1.
    RefSeqiYP_001286901.1. NC_009565.1.

    Genome annotation databases

    EnsemblBacteriaiABR05299; ABR05299; TBFG_10956.
    GeneIDi5221630.
    KEGGimtf:TBFG_10956.
    PATRICi18132764. VBIMycTub9078_1045.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000717 Genomic DNA. Translation: ABR05299.1 .
    JLDC01000002 Genomic DNA. Translation: KBJ37862.1 .
    RefSeqi YP_001286901.1. NC_009565.1.

    3D structure databases

    ProteinModelPortali A5WKW0.
    SMRi A5WKW0. Positions 2-289, 453-759.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 336982.TBFG_10956.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ABR05299 ; ABR05299 ; TBFG_10956 .
    GeneIDi 5221630.
    KEGGi mtf:TBFG_10956.
    PATRICi 18132764. VBIMycTub9078_1045.

    Phylogenomic databases

    eggNOGi COG3285.
    HOGENOMi HOG000222509.
    KOi K01971.
    OMAi SKGIHLY.
    OrthoDBi EOG661H49.

    Enzyme and pathway databases

    BioCyci MTUB336982:GH7I-970-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: F11Imported.
    2. Cited for: NUCLEOTIDE SEQUENCE.
      Strain: F11Imported.
    3. Cited for: NUCLEOTIDE SEQUENCE.
      Strain: F11Imported.

    Entry informationi

    Entry nameiA5WKW0_MYCTF
    AccessioniPrimary (citable) accession number: A5WKW0
    Entry historyi
    Integrated into UniProtKB/TrEMBL: July 28, 2009
    Last sequence update: July 28, 2009
    Last modified: October 1, 2014
    This is version 35 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3