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A5WB10

- RNPH_PSEP1

UniProt

A5WB10 - RNPH_PSEP1

Protein

Ribonuclease PH

Gene

rph

Organism
Pseudomonas putida (strain F1 / ATCC 700007)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 40 (01 Oct 2014)
      Sequence version 1 (10 Jul 2007)
      Previous versions | rss
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    Functioni

    Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates.UniRule annotation

    Catalytic activityi

    tRNA(n+1) + phosphate = tRNA(n) + a nucleoside diphosphate.UniRule annotation

    GO - Molecular functioni

    1. tRNA binding Source: InterPro
    2. tRNA nucleotidyltransferase activity Source: UniProtKB-EC
    3. tRNA-specific ribonuclease activity Source: InterPro

    GO - Biological processi

    1. tRNA processing Source: UniProtKB-KW

    Keywords - Molecular functioni

    Nucleotidyltransferase, Transferase

    Keywords - Biological processi

    tRNA processing

    Enzyme and pathway databases

    BioCyciPPUT351746:GI26-5295-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Ribonuclease PHUniRule annotation (EC:2.7.7.56UniRule annotation)
    Short name:
    RNase PHUniRule annotation
    Alternative name(s):
    tRNA nucleotidyltransferaseUniRule annotation
    Gene namesi
    Name:rphUniRule annotation
    Ordered Locus Names:Pput_5202
    OrganismiPseudomonas putida (strain F1 / ATCC 700007)
    Taxonomic identifieri351746 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas
    ProteomesiUP000006553: Chromosome

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 240240Ribonuclease PHPRO_1000024852Add
    BLAST

    Interactioni

    Protein-protein interaction databases

    STRINGi351746.Pput_5202.

    Structurei

    3D structure databases

    ProteinModelPortaliA5WB10.
    SMRiA5WB10. Positions 1-240.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the RNase PH family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG0689.
    HOGENOMiHOG000229516.
    KOiK00989.
    OMAiERTIQID.
    OrthoDBiEOG6CZQQP.

    Family and domain databases

    Gene3Di3.30.230.70. 1 hit.
    HAMAPiMF_00564. RNase_PH.
    InterProiIPR001247. ExoRNase_PH_dom1.
    IPR015847. ExoRNase_PH_dom2.
    IPR027408. PNPase/RNase_PH_dom.
    IPR020568. Ribosomal_S5_D2-typ_fold.
    IPR002381. RNase_PH_bac-type.
    IPR018336. RNase_PH_CS.
    [Graphical view]
    PfamiPF01138. RNase_PH. 1 hit.
    PF03725. RNase_PH_C. 1 hit.
    [Graphical view]
    SUPFAMiSSF54211. SSF54211. 1 hit.
    SSF55666. SSF55666. 1 hit.
    TIGRFAMsiTIGR01966. RNasePH. 1 hit.
    PROSITEiPS01277. RIBONUCLEASE_PH. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    A5WB10-1 [UniParc]FASTAAdd to Basket

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    MKRPSGRVAD QLRSIRITRN YTKHAEGSVL VEFGDTKVIC TVSVENGVPR    50
    FLKGQGQGWL TAEYGMLPRS TGERNQREAS RGKQGGRTLE IQRLIGRSLR 100
    AALDMSKLGD ITLYVDCDVI QADGGTRTAS ITGAMVALCD ALAVIKKRGG 150
    LKGGNPLKHM IAAVSVGMYQ GEAVLDLDYL EDSAAETDLN VVMTSAGGFI 200
    EVQGTAEGAP FQPEDFNAML ALAQKGMNEI FELQQAALAD 240
    Length:240
    Mass (Da):25,723
    Last modified:July 10, 2007 - v1
    Checksum:iE94D741962E77142
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000712 Genomic DNA. Translation: ABQ81320.1.
    RefSeqiYP_001270504.1. NC_009512.1.

    Genome annotation databases

    EnsemblBacteriaiABQ81320; ABQ81320; Pput_5202.
    GeneIDi5192830.
    KEGGippf:Pput_5202.
    PATRICi19926672. VBIPsePut56420_5277.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000712 Genomic DNA. Translation: ABQ81320.1 .
    RefSeqi YP_001270504.1. NC_009512.1.

    3D structure databases

    ProteinModelPortali A5WB10.
    SMRi A5WB10. Positions 1-240.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 351746.Pput_5202.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ABQ81320 ; ABQ81320 ; Pput_5202 .
    GeneIDi 5192830.
    KEGGi ppf:Pput_5202.
    PATRICi 19926672. VBIPsePut56420_5277.

    Phylogenomic databases

    eggNOGi COG0689.
    HOGENOMi HOG000229516.
    KOi K00989.
    OMAi ERTIQID.
    OrthoDBi EOG6CZQQP.

    Enzyme and pathway databases

    BioCyci PPUT351746:GI26-5295-MONOMER.

    Family and domain databases

    Gene3Di 3.30.230.70. 1 hit.
    HAMAPi MF_00564. RNase_PH.
    InterProi IPR001247. ExoRNase_PH_dom1.
    IPR015847. ExoRNase_PH_dom2.
    IPR027408. PNPase/RNase_PH_dom.
    IPR020568. Ribosomal_S5_D2-typ_fold.
    IPR002381. RNase_PH_bac-type.
    IPR018336. RNase_PH_CS.
    [Graphical view ]
    Pfami PF01138. RNase_PH. 1 hit.
    PF03725. RNase_PH_C. 1 hit.
    [Graphical view ]
    SUPFAMi SSF54211. SSF54211. 1 hit.
    SSF55666. SSF55666. 1 hit.
    TIGRFAMsi TIGR01966. RNasePH. 1 hit.
    PROSITEi PS01277. RIBONUCLEASE_PH. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: F1 / ATCC 700007.

    Entry informationi

    Entry nameiRNPH_PSEP1
    AccessioniPrimary (citable) accession number: A5WB10
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: January 15, 2008
    Last sequence update: July 10, 2007
    Last modified: October 1, 2014
    This is version 40 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome

    Documents

    1. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3