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Protein

Probable D-serine dehydratase

Gene

dsdA

Organism
Pseudomonas putida (strain ATCC 700007 / DSM 6899 / BCRC 17059 / F1)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Catalytic activityi

D-serine = pyruvate + NH3.UniRule annotation

Cofactori

pyridoxal 5'-phosphateUniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Lyase

Keywords - Ligandi

Pyridoxal phosphate

Names & Taxonomyi

Protein namesi
Recommended name:
Probable D-serine dehydrataseUniRule annotation (EC:4.3.1.18UniRule annotation)
Alternative name(s):
D-serine deaminaseUniRule annotation
Short name:
DSDUniRule annotation
Gene namesi
Name:dsdAUniRule annotation
Ordered Locus Names:Pput_3070
OrganismiPseudomonas putida (strain ATCC 700007 / DSM 6899 / BCRC 17059 / F1)
Taxonomic identifieri351746 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas
Proteomesi
  • UP000006553 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_10000637151 – 449Probable D-serine dehydrataseAdd BLAST449

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Modified residuei119N6-(pyridoxal phosphate)lysineUniRule annotation1

Interactioni

Protein-protein interaction databases

STRINGi351746.Pput_3070.

Structurei

3D structure databases

ProteinModelPortaliA5W4Y8.
SMRiA5W4Y8.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the serine/threonine dehydratase family. DsdA subfamily.UniRule annotation

Phylogenomic databases

eggNOGiENOG4105BZC. Bacteria.
COG3048. LUCA.
HOGENOMiHOG000218072.
KOiK01753.
OMAiESDPNCF.

Family and domain databases

HAMAPiMF_01030. D_Ser_dehydrat. 1 hit.
InterProiIPR011780. D_Ser_am_lyase.
IPR000634. Ser/Thr_deHydtase_PyrdxlP-BS.
IPR001926. TrpB-like_PLP-dep.
[Graphical view]
PANTHERiPTHR10314:SF9. PTHR10314:SF9. 3 hits.
PfamiPF00291. PALP. 1 hit.
[Graphical view]
SUPFAMiSSF53686. SSF53686. 1 hit.
TIGRFAMsiTIGR02035. D_Ser_am_lyase. 1 hit.
PROSITEiPS00165. DEHYDRATASE_SER_THR. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A5W4Y8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MIHGKTLEAW QQSHPIIAEL VALKPTSWFN PGIAKAAEAL HDVGLTAADV
60 70 80 90 100
QAASARLLRF APYLATVFPE TAAAGGVIES PVIPLPQLRR VLVEEGSLQN
110 120 130 140 150
AGSLWLKADS DLPISGSIKA RGGIHEVLKH AEDLALAAGL ITPTDDYTKL
160 170 180 190 200
ASDQARAFFS QYTIAVGSTG NLGLSIGIMS AKLGFQVSVH MSSDARQWKK
210 220 230 240 250
DKLRANGVTV VEHASDYSVA VEQGRQQAAS DPRCYFVDDE NSPQLFLGYA
260 270 280 290 300
VAAERLARQF DQAGIQVNAD HPLFVYLPCG VGGGPGGVAF GLKLVFGDAV
310 320 330 340 350
HCIFAEPTHS PCMLLGVYTG LHDETSVQDF GIDNITAADG LAVGRPSGFV
360 370 380 390 400
GKAMQRLIDG YYTVADEELY RLMVIAHEQD KVKLEPSALA GVPGMLRVLQ
410 420 430 440
AGEYLARQGF TPTQLQQATH LVWGTGGSMV PDDEFNTYLA KGRSLQANV
Length:449
Mass (Da):47,922
Last modified:July 10, 2007 - v1
Checksum:iCF3783798310EC88
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000712 Genomic DNA. Translation: ABQ79198.1.
RefSeqiWP_012052768.1. NC_009512.1.

Genome annotation databases

EnsemblBacteriaiABQ79198; ABQ79198; Pput_3070.
KEGGippf:Pput_3070.
PATRICi19922275. VBIPsePut56420_3122.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000712 Genomic DNA. Translation: ABQ79198.1.
RefSeqiWP_012052768.1. NC_009512.1.

3D structure databases

ProteinModelPortaliA5W4Y8.
SMRiA5W4Y8.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi351746.Pput_3070.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABQ79198; ABQ79198; Pput_3070.
KEGGippf:Pput_3070.
PATRICi19922275. VBIPsePut56420_3122.

Phylogenomic databases

eggNOGiENOG4105BZC. Bacteria.
COG3048. LUCA.
HOGENOMiHOG000218072.
KOiK01753.
OMAiESDPNCF.

Family and domain databases

HAMAPiMF_01030. D_Ser_dehydrat. 1 hit.
InterProiIPR011780. D_Ser_am_lyase.
IPR000634. Ser/Thr_deHydtase_PyrdxlP-BS.
IPR001926. TrpB-like_PLP-dep.
[Graphical view]
PANTHERiPTHR10314:SF9. PTHR10314:SF9. 3 hits.
PfamiPF00291. PALP. 1 hit.
[Graphical view]
SUPFAMiSSF53686. SSF53686. 1 hit.
TIGRFAMsiTIGR02035. D_Ser_am_lyase. 1 hit.
PROSITEiPS00165. DEHYDRATASE_SER_THR. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiSDHD_PSEP1
AccessioniPrimary (citable) accession number: A5W4Y8
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 5, 2008
Last sequence update: July 10, 2007
Last modified: November 2, 2016
This is version 56 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.