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A5W1M2 (A5W1M2_PSEP1) Unreviewed, UniProtKB/TrEMBL

Last modified January 25, 2012. Version 25. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
Glycoside hydrolase, family 28 EMBL ABQ78032.1
Gene names
Ordered Locus Names:Pput_1884
OrganismPseudomonas putida (strain F1 / ATCC 700007) [Complete proteome] [HAMAP] EMBL ABQ78032.1
Taxonomic identifier351746 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Gammaproteobacteria › Pseudomonadales › Pseudomonadaceae › Pseudomonas

Protein attributes

Sequence length606 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existencePredicted

Ontologies

Keywords
   DomainSignal EMBL ABQ78032.1
   Molecular functionHydrolase EMBL ABQ78032.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological processcarbohydrate metabolic process

Inferred from electronic annotation. Source: InterPro

   Molecular functionpolygalacturonase activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Signal peptide1 – 3030 Potential EMBL ABQ78032.1
Chain31 – 606576 Potential EMBL ABQ78032.1
PRO_5000251887

Sequences

Sequence LengthMass (Da)Tools
A5W1M2 [UniParc].

Last modified July 10, 2007. Version 1.
Checksum: 951574DB99501B19

FASTA60666,109
        10         20         30         40         50         60 
MPNANLAPAS LVRAAVVALA MGSSLPLWAV EAPAKVQVPT LAYDDRQIIL VWEKPASHAE 

        70         80         90        100        110        120 
IVDYHVYANG RLLGASNANN EQVSPAKPYI DRFYEQDLHN FHHRIAIHSF TAQGLAPDTE 

       130        140        150        160        170        180 
YHFTVRSVDR NGKESADSPV VVQRTTAIPA LFNVQRYGAK GDGKALDTAA IQRAIDACSK 

       190        200        210        220        230        240 
GCKVLLPAGT YKSGALYLKS DMTLEIAEGA TLLGSERAED YPRQGYIQYP YSTTVRPASL 

       250        260        270        280        290        300 
INALPRDPRA HQAFENIRIV GKGTIDGNGW KRNPDVLDER GQALPFYLPS DNSRYMHDGV 

       310        320        330        340        350        360 
LAKAQVERAV AEGMNVKDAY GQMRSSLITL RNVKNVFYGG FTVVNPAYHG IMNLETQNVV 

       370        380        390        400        410        420 
LANTTHRTYD ANNGDGIEFA NSRGALVFNN FFDTGDDCVN FAAGTGADAV HQKAQEEAWI 

       430        440        450        460        470        480 
FNNYFRKGHG MVVAGSHTGA WIQHILAEDN VSDGTDAGLR MKSTNFMGGG ARHVTFRDSA 

       490        500        510        520        530        540 
IRNTAKQAFI FTLDYNDPNA KLDYKRSAVA GQFRDITVSD VSVENARTAA IEVKGDSSHG 

       550        560        570        580        590        600 
AWHQGLVFER VRFRGPAPVK IDGLKDSRFD GLRFTDTGGA NPWQVQGSQG LVYTDVEPAP 


GPQASL

« Hide

References

[1]"Complete sequence of Pseudomonas putida F1."
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M. expand/collapse author list , Hauser L., Kyrpides N., Lykidis A., Parales R., Richardson P.
Submitted (MAY-2007) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: F1 / ATCC 700007.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000712 Genomic DNA. Translation: ABQ78032.1.
RefSeqYP_001267216.1. NC_009512.1.

3D structure databases

ProteinModelPortalA5W1M2.
SMRA5W1M2. Positions 31-595.
ModBaseSearch...

Protein-protein interaction databases

STRINGA5W1M2.

Protein family/group databases

CAZyGH28. Glycoside Hydrolase Family 28.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID5191007.
GenomeReviewsGene locus Pput_1884 in contig CP000712_GR.
KEGGppf:Pput_1884.
PATRIC19919860. VBIPsePut56420_1914.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG5434.
HOGENOMHBG640332.
OMAAWIFNNY.
ProtClustDBCLSK802487.

Enzyme and pathway databases

BioCycPPUT351746:PPUT_1884-MONOMER.

Family and domain databases

InterProIPR003961. Fibronectin_type3.
IPR000743. Glyco_hydro_28.
IPR013783. Ig-like_fold.
IPR006626. PbH1.
IPR012334. Pectin_lyas_fold.
IPR011050. Pectin_lyase_fold/virulence.
[Graphical view]
Gene3DG3DSA:2.60.40.10. Ig-like_fold. 1 hit.
G3DSA:2.160.20.10. Pectin_lyas_fold. 1 hit.
PfamPF00041. fn3. 1 hit.
PF00295. Glyco_hydro_28. 1 hit.
[Graphical view]
SMARTSM00060. FN3. 1 hit.
SM00710. PbH1. 5 hits.
[Graphical view]
SUPFAMSSF49265. FN_III-like. 1 hit.
SSF51126. Pectin_lyas_like. 1 hit.
PROSITEPS50853. FN3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameA5W1M2_PSEP1
AccessionPrimary (citable) accession number: A5W1M2
Entry history
Integrated into UniProtKB/TrEMBL: July 10, 2007
Last sequence update: July 10, 2007
Last modified: January 25, 2012
This is version 25 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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