A5VZJ6 (A5VZJ6_PSEP1) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
ATP dependent DNA ligase EMBL ABQ77306.1

Gene names

Ordered Locus Names:

Pput_1145 EMBL ABQ77306.1

Organism

Pseudomonas putida (strain F1 / ATCC 700007) [Complete proteome] [HAMAP] EMBL ABQ77306.1

Taxonomic identifier

351746 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Gammaproteobacteria › Pseudomonadales › Pseudomonadaceae › Pseudomonas › Pseudomonas putida group › Pseudomonas putida

Protein attributes

Sequence length	552 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL ABQ77306.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA ligation involved in DNA repair Inferred from electronic annotation. Source: InterPro DNA recombination Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	A5VZJ6 [UniParc]. Last modified July 10, 2007. Version 1. Checksum: CDD9F069E5EA6857	FASTA	552	62,035
	10 20 30 40 50 60 MKAFAALFLR LDATTSSNAK LEALRDYFDM APADDAAWAV YFLAGGRPRQ LVPTRLLREL 70 80 90 100 110 120 ATALAGLPDW LFEESYQAVG DLAETISLLL PLHADGNDEG LATWVEQHLL PLRGLPPEQV 130 140 150 160 170 180 RQRLPPLWAR LDRASLMLCL KLITGSFRVG VSKLLVTRAL AQLAGLDAKR VAQRLVGYTD 190 200 210 220 230 240 IGHRPTAASY QRLIAPESAD EHNQRGGQPY PFFLAHPLQV SSDQFDTLLG PPSDWQIEWK 250 260 270 280 290 300 WDGIRAQVVK RDGQLWVWSR GEELVTERFP ELHGLAQTLP DGVVLDGEIL VWKPGETETE 310 320 330 340 350 360 LAVQPFALLQ QRIGRKTLGK KLLNDAPVVL QAYDLLEWQG DDWRSRPQHE RRSQLERLVD 370 380 390 400 410 420 EHPLAPVLLS PLLQGPDWAD LARQREQSRS LGVEGLMLKQ REALYGVGRT KDMGIWWKWK 430 440 450 460 470 480 IDPFSVDAVL IYAQRGHGRR ASLYSDYTFA VWDAPAGTPG RALVPFAKAY SGLSDEEMRK 490 500 510 520 530 540 VDAIIRKTTV ETFGPVRSVT PTLVFELGFE GIALSRRHKS GIAVRFPRML RWRLDKPVEE 550 ADDLATLQAL LA

References

[1]

"Complete sequence of Pseudomonas putida F1." US DOE Joint Genome Institute Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M. , Hauser L., Kyrpides N., Lykidis A., Parales R., Richardson P. Submitted (MAY-2007) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: F1 / ATCC 700007.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000712 Genomic DNA. Translation: ABQ77306.1.
RefSeq	YP_001266490.1. NC_009512.1.
3D structure databases
ProteinModelPortal	A5VZJ6.
ModBase	Search...
Protein-protein interaction databases
STRING	351746.Pput_1145.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ABQ77306; ABQ77306; Pput_1145.
GeneID	5192987.
KEGG	ppf:Pput_1145.
PATRIC	19918307. VBIPsePut56420_1153.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG1793.
HOGENOM	HOG000036007.
KO	K01971.
OMA	AYDLLEW.
ProtClustDB	PRK09247.
Enzyme and pathway databases
BioCyc	PPUT351746:GI26-1241-MONOMER.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR026333. ATP_dep_DNA_lig_pp_1105_fam. IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR016059. DNA_ligase_ATP-dep_CS. IPR012308. DNA_ligase_ATP-dep_N. IPR012340. NA-bd_OB-fold. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. PF04675. DNA_ligase_A_N. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMs	TIGR04120. DNA_lig_bact. 1 hit.
PROSITE	PS00697. DNA_LIGASE_A1. 1 hit. PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

A5VZJ6_PSEP1

Accession

Primary (citable) accession number: A5VZJ6

Entry history

Integrated into UniProtKB/TrEMBL:	July 10, 2007
Last sequence update:	July 10, 2007
Last modified:	May 1, 2013
This is version 44 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)