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A5VZJ6 (A5VZJ6_PSEP1) Unreviewed, UniProtKB/TrEMBL

Last modified November 13, 2013. Version 47. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Ordered Locus Names:Pput_1145 EMBL ABQ77306.1
OrganismPseudomonas putida (strain F1 / ATCC 700007) [Complete proteome] [HAMAP] EMBL ABQ77306.1
Taxonomic identifier351746 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas

Protein attributes

Sequence length552 AA.
Sequence statusComplete.
Protein existencePredicted

Sequences

Sequence LengthMass (Da)Tools
A5VZJ6 [UniParc].

Last modified July 10, 2007. Version 1.
Checksum: CDD9F069E5EA6857

FASTA55262,035
        10         20         30         40         50         60 
MKAFAALFLR LDATTSSNAK LEALRDYFDM APADDAAWAV YFLAGGRPRQ LVPTRLLREL 

        70         80         90        100        110        120 
ATALAGLPDW LFEESYQAVG DLAETISLLL PLHADGNDEG LATWVEQHLL PLRGLPPEQV 

       130        140        150        160        170        180 
RQRLPPLWAR LDRASLMLCL KLITGSFRVG VSKLLVTRAL AQLAGLDAKR VAQRLVGYTD 

       190        200        210        220        230        240 
IGHRPTAASY QRLIAPESAD EHNQRGGQPY PFFLAHPLQV SSDQFDTLLG PPSDWQIEWK 

       250        260        270        280        290        300 
WDGIRAQVVK RDGQLWVWSR GEELVTERFP ELHGLAQTLP DGVVLDGEIL VWKPGETETE 

       310        320        330        340        350        360 
LAVQPFALLQ QRIGRKTLGK KLLNDAPVVL QAYDLLEWQG DDWRSRPQHE RRSQLERLVD 

       370        380        390        400        410        420 
EHPLAPVLLS PLLQGPDWAD LARQREQSRS LGVEGLMLKQ REALYGVGRT KDMGIWWKWK 

       430        440        450        460        470        480 
IDPFSVDAVL IYAQRGHGRR ASLYSDYTFA VWDAPAGTPG RALVPFAKAY SGLSDEEMRK 

       490        500        510        520        530        540 
VDAIIRKTTV ETFGPVRSVT PTLVFELGFE GIALSRRHKS GIAVRFPRML RWRLDKPVEE 

       550 
ADDLATLQAL LA 

« Hide

References

[1]"Complete sequence of Pseudomonas putida F1."
US DOE Joint Genome Institute
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M. expand/collapse author list , Hauser L., Kyrpides N., Lykidis A., Parales R., Richardson P.
Submitted (MAY-2007) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: F1 / ATCC 700007.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000712 Genomic DNA. Translation: ABQ77306.1.
RefSeqYP_001266490.1. NC_009512.1.

3D structure databases

ProteinModelPortalA5VZJ6.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING351746.Pput_1145.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABQ77306; ABQ77306; Pput_1145.
GeneID5192987.
KEGGppf:Pput_1145.
PATRIC19918307. VBIPsePut56420_1153.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG1793.
HOGENOMHOG000036007.
KOK01971.
OMAGQPYPFF.
OrthoDBEOG6Q8HXT.
ProtClustDBPRK09247.

Enzyme and pathway databases

BioCycPPUT351746:GI26-1173-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR04120. DNA_lig_bact. 1 hit.
PROSITEPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameA5VZJ6_PSEP1
AccessionPrimary (citable) accession number: A5VZJ6
Entry history
Integrated into UniProtKB/TrEMBL: July 10, 2007
Last sequence update: July 10, 2007
Last modified: November 13, 2013
This is version 47 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)