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Protein

Exodeoxyribonuclease 7 small subunit

Gene

xseB

Organism
Pseudomonas putida (strain ATCC 700007 / DSM 6899 / BCRC 17059 / F1)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides.UniRule annotation

Catalytic activityi

Exonucleolytic cleavage in either 5'- to 3'- or 3'- to 5'-direction to yield nucleoside 5'-phosphates.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionExonuclease, Hydrolase, Nuclease

Names & Taxonomyi

Protein namesi
Recommended name:
Exodeoxyribonuclease 7 small subunitUniRule annotation (EC:3.1.11.6UniRule annotation)
Alternative name(s):
Exodeoxyribonuclease VII small subunitUniRule annotation
Short name:
Exonuclease VII small subunitUniRule annotation
Gene namesi
Name:xseBUniRule annotation
Ordered Locus Names:Pput_0563
OrganismiPseudomonas putida (strain ATCC 700007 / DSM 6899 / BCRC 17059 / F1)
Taxonomic identifieri351746 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas
Proteomesi
  • UP000006553 Componenti: Chromosome

Subcellular locationi

  • Cytoplasm UniRule annotation

GO - Cellular componenti

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_10000195871 – 80Exodeoxyribonuclease 7 small subunitAdd BLAST80

Interactioni

Subunit structurei

Heterooligomer composed of large and small subunits.UniRule annotation

Protein-protein interaction databases

STRINGi351746.Pput_0563.

Structurei

3D structure databases

ProteinModelPortaliA5VXX1.
SMRiA5VXX1.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the XseB family.UniRule annotation

Phylogenomic databases

eggNOGiCOG1722. LUCA.
HOGENOMiHOG000228798.
KOiK03602.
OMAiAPLNDYK.

Family and domain databases

Gene3Di1.10.287.1040. 1 hit.
HAMAPiMF_00337. Exonuc_7_S. 1 hit.
InterProiView protein in InterPro
IPR003761. Exonuc_VII_S.
PANTHERiPTHR34137. PTHR34137. 1 hit.
PfamiView protein in Pfam
PF02609. Exonuc_VII_S. 1 hit.
PIRSFiPIRSF006488. Exonuc_VII_S. 1 hit.
ProDomiView protein in ProDom or Entries sharing at least one domain
PD028235. Exonuc_VII_S. 1 hit.
TIGRFAMsiTIGR01280. xseB. 1 hit.

Sequencei

Sequence statusi: Complete.

A5VXX1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MARKKASLDF EQSLADLQAL VERLENGELS LEESLAAFEQ GIALTRDCQG
60 70 80
ALAQAEQKVQ ILLERDGELA AQPFDAEPEA
Length:80
Mass (Da):8,730
Last modified:July 10, 2007 - v1
Checksum:i0302302AF98823BC
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000712 Genomic DNA. Translation: ABQ76731.1.
RefSeqiWP_003255380.1. NC_009512.1.

Genome annotation databases

EnsemblBacteriaiABQ76731; ABQ76731; Pput_0563.
KEGGippf:Pput_0563.
PATRICi19917105. VBIPsePut56420_0564.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000712 Genomic DNA. Translation: ABQ76731.1.
RefSeqiWP_003255380.1. NC_009512.1.

3D structure databases

ProteinModelPortaliA5VXX1.
SMRiA5VXX1.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi351746.Pput_0563.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABQ76731; ABQ76731; Pput_0563.
KEGGippf:Pput_0563.
PATRICi19917105. VBIPsePut56420_0564.

Phylogenomic databases

eggNOGiCOG1722. LUCA.
HOGENOMiHOG000228798.
KOiK03602.
OMAiAPLNDYK.

Family and domain databases

Gene3Di1.10.287.1040. 1 hit.
HAMAPiMF_00337. Exonuc_7_S. 1 hit.
InterProiView protein in InterPro
IPR003761. Exonuc_VII_S.
PANTHERiPTHR34137. PTHR34137. 1 hit.
PfamiView protein in Pfam
PF02609. Exonuc_VII_S. 1 hit.
PIRSFiPIRSF006488. Exonuc_VII_S. 1 hit.
ProDomiView protein in ProDom or Entries sharing at least one domain
PD028235. Exonuc_VII_S. 1 hit.
TIGRFAMsiTIGR01280. xseB. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiEX7S_PSEP1
AccessioniPrimary (citable) accession number: A5VXX1
Entry historyiIntegrated into UniProtKB/Swiss-Prot: January 15, 2008
Last sequence update: July 10, 2007
Last modified: April 12, 2017
This is version 60 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.