A5VG48 (A5VG48_SPHWW) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Transketolase, central region EMBL ABQ71264.1

Gene names

Ordered Locus Names:

Swit_5153

Encoded on

Plasmid pSWIT01 EMBL ABQ71264.1

Organism

Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) [Complete proteome] [HAMAP]

Taxonomic identifier

392499 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Alphaproteobacteria › Sphingomonadales › Sphingomonadaceae › Sphingomonas

Protein attributes

Sequence length	456 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Cofactor	Binds 1 lipoyl cofactor covalently By similarity. SAAS SAAS003016
Sequence similarities	Contains 1 lipoyl-binding domain. SAAS SAAS003016

Ontologies

Keywords
Domain	Lipoyl SAAS SAAS003016
Technical term	Complete proteome Plasmid EMBL ABQ71264.1
Gene Ontology (GO)
Molecular function	catalytic activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	A5VG48 [UniParc]. Last modified July 10, 2007. Version 1. Checksum: 99B48960F305E9CD	FASTA	456	48,329
	10 20 30 40 50 60 MAIELKMPAL SPTMEEGTLA KWLVKEGDAV KSGDILAEIE TDKATMEFEA VDEGIIAKIV 70 80 90 100 110 120 IPEGTDGVKV GAVIALIAGE GESAVTVQAA APAPKVEAPA PKAAEPAPQP VAAPAPRAAV 130 140 150 160 170 180 ADPDIPAGTE IVKTTVREAL RDAMAEEMRA DDRVFVMGEE VAQYQGAYKV TQGLLEEFGD 190 200 210 220 230 240 RRVIDTPITE YGFAGIGTGA AMGGLKPIVE FMTFNFAMQA IDHIINSAAK TNYMSGGQMR 250 260 270 280 290 300 CPVVFRGPNG AASRVGAQHS QNYGPWYAAV PGLIVIAPYS AADAKGLLKA AIRSPDPVVF 310 320 330 340 350 360 LENELLYGQS FDVPKLDDHV LPIGKARIAR AGRDVTLVSY SIGVGVALEA ADKLADEGVD 370 380 390 400 410 420 AEVIDLRTLR PLDKETVLKS LAKTNRMVVV EEGWPVCSIS SEIIAIAMQE GFDDLDAPVL 430 440 450 RVTNKDVPLP YAANLEKAAL IKADDVVAAV KRVRYR

References

[1]

"Complete sequence of plasmid pSWIT01 of Sphingomonas wittichii RW1." Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Saunders E., Brettin T., Bruce D., Detter J.C., Han C., Tapia R., Gilna P., Schmutz J., Larimer F., Land M. , Hauser L., Kyrpides N., Kim E., Halden R.U., Miller T.R., Salzberg S.L., Eisen J.A., Richardson P. Submitted (MAY-2007) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: RW1 / DSM 6014 / JCM 10273.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000700 Genomic DNA. Translation: ABQ71264.1.
RefSeq	YP_001260031.1. NC_009507.1.
3D structure databases
ProteinModelPortal	A5VG48.
SMR	A5VG48. Positions 132-453.
ModBase	Search...
Protein-protein interaction databases
STRING	A5VG48.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	5195813.
GenomeReviews	Gene locus Swit_5153 in contig CP000700_GR.
KEGG	swi:Swit_5153.
NMPDR	fig|392499.4.peg.34.
PATRIC	23678134. VBISphWit55028_0044.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0022.
HOGENOM	HBG753264.
OMA	PTEEYLV.
ProtClustDB	PRK11892.
Family and domain databases
InterPro	IPR003016. 2-oxoA_DH_lipoyl-BS. IPR000089. Biotin_lipoyl. IPR011053. Single_hybrid_motif. IPR009014. Transketo_C/Pyr-ferredox_oxred. IPR015941. Transketolase-like_C. IPR005475. Transketolase-like_Pyr-bd. IPR005476. Transketolase_C. [Graphical view]
Gene3D	G3DSA:3.40.50.920. Transketo_C_like. 1 hit.
KO	K00162.
Pfam	PF00364. Biotin_lipoyl. 1 hit. PF02779. Transket_pyr. 1 hit. PF02780. Transketolase_C. 1 hit. [Graphical view]
SMART	SM00861. Transket_pyr. 1 hit. [Graphical view]
SUPFAM	SSF51230. Hybrid_motif. 1 hit. SSF52922. Transketo_C_like. 1 hit.
PROSITE	PS50968. BIOTINYL_LIPOYL. 1 hit. PS00189. LIPOYL. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

A5VG48_SPHWW

Accession

Primary (citable) accession number: A5VG48

Entry history

Integrated into UniProtKB/TrEMBL:	July 10, 2007
Last sequence update:	July 10, 2007
Last modified:	December 14, 2011
This is version 30 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)