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A5VDW3 (A5VDW3_SPHWW) Unreviewed, UniProtKB/TrEMBL

Last modified February 19, 2014. Version 47. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein attributes

Sequence length384 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids By similarity. HAMAP-Rule MF_01201

Catalytic activity

L-alanine = D-alanine. HAMAP-Rule MF_01201

Cofactor

Pyridoxal phosphate By similarity. HAMAP-Rule MF_01201 SAAS SAAS009006

Pathway

Amino-acid biosynthesis; D-alanine biosynthesis; D-alanine from L-alanine: step 1/1. HAMAP-Rule MF_01201

Sequence similarities

Belongs to the alanine racemase family. HAMAP-Rule MF_01201

Ontologies

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Active site521Proton acceptor; specific for D-alanine By similarity HAMAP-Rule MF_01201
Active site2731Proton acceptor; specific for L-alanine By similarity HAMAP-Rule MF_01201
Binding site1461Substrate By similarity HAMAP-Rule MF_01201

Amino acid modifications

Modified residue521N6-(pyridoxal phosphate)lysine By similarity HAMAP-Rule MF_01201

Sequences

Sequence LengthMass (Da)Tools
A5VDW3 [UniParc].

Last modified July 10, 2007. Version 1.
Checksum: 5644A86229A4D5B6

FASTA38440,870
        10         20         30         40         50         60 
MNCLEVHRDI GVHEVADRRG NAFQLDERAF HANVEQVRRL LPPGTKIYQC AKGDGYGVGV 

        70         80         90        100        110        120 
ERIVCLGVRA GVDGFCLGTP EEALRAKCVA AGRPVLLFAG CDPAALGEMV EAGIIVSISS 

       130        140        150        160        170        180 
VEGCEALLRS GATGDVFFKL DCGFRRYGLN EPDLRTVLAR VRRQSSVRCI GAYSHFGSRA 

       190        200        210        220        230        240 
DEIVDGGLPL FDRLTRLIED AVQRPIETMV ASSTLILQRP GLGHSAVDPG RLLYGMMAAG 

       250        260        270        280        290        300 
PEMPPFQPIV PRISSRLLQV TPFDEARLLT VGYADKTAIP AGGATGVFPL GWIDGLSAHR 

       310        320        330        340        350        360 
GFGEVLIRGT RLSVVARTLQ HSIVNLSGLS DVRVGDEVVL VGAQGDEQIG LEAMASAQGM 

       370        380 
SVTEAHFRLL AAIAAGVPNG RQHG 

« Hide

References

[1]"Complete sequence of chromosome of Sphingomonas wittichii RW1."
US DOE Joint Genome Institute
Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Saunders E., Brettin T., Bruce D., Detter J.C., Han C., Tapia R., Gilna P., Schmutz J., Larimer F., Land M. expand/collapse author list , Hauser L., Kyrpides N., Kim E., Halden R.U., Miller T.R., Salzberg S.L., Eisen J.A., Richardson P.
Submitted (MAY-2007) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: RW1 / DSM 6014 / JCM 10273.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000699 Genomic DNA. Translation: ABQ70479.1.
RefSeqYP_001264617.1. NC_009511.1.

3D structure databases

ProteinModelPortalA5VDW3.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING392499.Swit_4139.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABQ70479; ABQ70479; Swit_4139.
GeneID5198492.
KEGGswi:Swit_4139.
PATRIC23687577. VBISphWit55028_4716.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0787.
KOK01775.
OMAQTISHEE.
OrthoDBEOG6PP9NJ.
ProtClustDBCLSK845893.

Enzyme and pathway databases

BioCycSWIT392499:GHZK-4189-MONOMER.
UniPathwayUPA00042; UER00497.

Family and domain databases

Gene3D2.40.37.10. 1 hit.
HAMAPMF_01201. Ala_racemase.
InterProIPR000821. Ala_racemase.
IPR009006. Ala_racemase/Decarboxylase_C.
IPR011079. Ala_racemase_C.
IPR001608. Ala_racemase_N.
IPR000595. cNMP-bd_dom.
[Graphical view]
PfamPF00842. Ala_racemase_C. 1 hit.
PF01168. Ala_racemase_N. 1 hit.
[Graphical view]
PRINTSPR00992. ALARACEMASE.
SMARTSM01005. Ala_racemase_C. 1 hit.
[Graphical view]
SUPFAMSSF50621. SSF50621. 1 hit.
PROSITEPS50042. CNMP_BINDING_3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameA5VDW3_SPHWW
AccessionPrimary (citable) accession number: A5VDW3
Entry history
Integrated into UniProtKB/TrEMBL: July 10, 2007
Last sequence update: July 10, 2007
Last modified: February 19, 2014
This is version 47 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)