A5VDW3 (A5VDW3_SPHWW) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Alanine racemase domain protein EMBL ABQ70479.1

Gene names

Ordered Locus Names:

Swit_4139 EMBL ABQ70479.1

Organism

Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) [Complete proteome] [HAMAP] EMBL ABQ70479.1

Taxonomic identifier

392499 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Alphaproteobacteria › Sphingomonadales › Sphingomonadaceae › Sphingomonas › Sphingomonas wittichii

Protein attributes

Sequence length	384 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Cofactor

Pyridoxal phosphate By similarity. SAAS SAAS011079

Ontologies

Keywords
Ligand	Pyridoxal phosphate SAAS SAAS011079
Molecular function	Isomerase SAAS SAAS011079
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	alanine metabolic process Inferred from electronic annotation. Source: InterPro
Molecular_function	alanine racemase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	A5VDW3 [UniParc]. Last modified July 10, 2007. Version 1. Checksum: 5644A86229A4D5B6	FASTA	384	40,870
	10 20 30 40 50 60 MNCLEVHRDI GVHEVADRRG NAFQLDERAF HANVEQVRRL LPPGTKIYQC AKGDGYGVGV 70 80 90 100 110 120 ERIVCLGVRA GVDGFCLGTP EEALRAKCVA AGRPVLLFAG CDPAALGEMV EAGIIVSISS 130 140 150 160 170 180 VEGCEALLRS GATGDVFFKL DCGFRRYGLN EPDLRTVLAR VRRQSSVRCI GAYSHFGSRA 190 200 210 220 230 240 DEIVDGGLPL FDRLTRLIED AVQRPIETMV ASSTLILQRP GLGHSAVDPG RLLYGMMAAG 250 260 270 280 290 300 PEMPPFQPIV PRISSRLLQV TPFDEARLLT VGYADKTAIP AGGATGVFPL GWIDGLSAHR 310 320 330 340 350 360 GFGEVLIRGT RLSVVARTLQ HSIVNLSGLS DVRVGDEVVL VGAQGDEQIG LEAMASAQGM 370 380 SVTEAHFRLL AAIAAGVPNG RQHG

References

[1]

"Complete sequence of chromosome of Sphingomonas wittichii RW1." US DOE Joint Genome Institute Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Saunders E., Brettin T., Bruce D., Detter J.C., Han C., Tapia R., Gilna P., Schmutz J., Larimer F., Land M. , Hauser L., Kyrpides N., Kim E., Halden R.U., Miller T.R., Salzberg S.L., Eisen J.A., Richardson P. Submitted (MAY-2007) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: RW1 / DSM 6014 / JCM 10273.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000699 Genomic DNA. Translation: ABQ70479.1.
RefSeq	YP_001264617.1. NC_009511.1.
3D structure databases
ProteinModelPortal	A5VDW3.
ModBase	Search...
Protein-protein interaction databases
STRING	392499.Swit_4139.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ABQ70479; ABQ70479; Swit_4139.
GeneID	5198492.
KEGG	swi:Swit_4139.
PATRIC	23687577. VBISphWit55028_4716.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0787.
KO	K01775.
OMA	KIYFVCK.
ProtClustDB	CLSK845893.
Family and domain databases
Gene3D	2.40.37.10. 1 hit.
InterPro	IPR000821. Ala_racemase. IPR009006. Ala_racemase/Decarboxylase_C. IPR011079. Ala_racemase_C. IPR001608. Ala_racemase_N. IPR000595. cNMP-bd_dom. [Graphical view]
Pfam	PF00842. Ala_racemase_C. 1 hit. PF01168. Ala_racemase_N. 1 hit. [Graphical view]
PRINTS	PR00992. ALARACEMASE.
SMART	SM01005. Ala_racemase_C. 1 hit. [Graphical view]
SUPFAM	SSF50621. Racem_decarbox_C. 1 hit.
PROSITE	PS50042. CNMP_BINDING_3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

A5VDW3_SPHWW

Accession

Primary (citable) accession number: A5VDW3

Entry history

Integrated into UniProtKB/TrEMBL:	July 10, 2007
Last sequence update:	July 10, 2007
Last modified:	May 1, 2013
This is version 42 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)