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A5VDM8

- DCD_SPHWW

UniProt

A5VDM8 - DCD_SPHWW

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Protein

Deoxycytidine triphosphate deaminase

Gene

dcd

Organism
Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi

Functioni

Catalytic activityi

dCTP + H2O = dUTP + NH3.UniRule annotation

Pathwayi

GO - Molecular functioni

  1. dCTP deaminase activity Source: UniProtKB-HAMAP

GO - Biological processi

  1. dUMP biosynthetic process Source: UniProtKB-UniPathway
  2. dUTP biosynthetic process Source: InterPro
  3. pyrimidine ribonucleotide biosynthetic process Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Hydrolase

Keywords - Biological processi

Nucleotide metabolism

Enzyme and pathway databases

BioCyciSWIT392499:GHZK-4099-MONOMER.
UniPathwayiUPA00610; UER00665.

Names & Taxonomyi

Protein namesi
Recommended name:
Deoxycytidine triphosphate deaminaseUniRule annotation (EC:3.5.4.13UniRule annotation)
Short name:
dCTP deaminaseUniRule annotation
Gene namesi
Name:dcdUniRule annotation
Ordered Locus Names:Swit_4050
OrganismiSphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273)
Taxonomic identifieri392499 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaSphingomonadalesSphingomonadaceaeSphingomonas
ProteomesiUP000001989: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 184184Deoxycytidine triphosphate deaminasePRO_1000009822Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi392499.Swit_4050.

Structurei

3D structure databases

ProteinModelPortaliA5VDM8.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the dCTP deaminase family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0717.
HOGENOMiHOG000228600.
KOiK01494.
OMAiEFEGHIT.
OrthoDBiEOG67DPKR.

Family and domain databases

Gene3Di2.70.40.10. 1 hit.
HAMAPiMF_00146. dCTP_deaminase.
InterProiIPR011962. dCTP_deam.
IPR029054. dUTPase-like.
IPR008180. dUTPase/dCTP_deaminase.
[Graphical view]
PfamiPF00692. dUTPase. 1 hit.
[Graphical view]
SUPFAMiSSF51283. SSF51283. 1 hit.
TIGRFAMsiTIGR02274. dCTP_deam. 1 hit.

Sequencei

Sequence statusi: Complete.

A5VDM8-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MTIMSDKWIR EQATKNGMIE PFVEAQRRDG CISYGLSSYG YDARVAPEFK
60 70 80 90 100
IFTNVDSATV DPKDFASNSF VDRETDVCII PPNSFALART VEYFRVPRDV
110 120 130 140 150
LVICLGKSTY ARCGIIVNVT PLEPGWEGHV TLEFSNTTPL PAKIYANEGA
160 170 180
CQFLFLQGNE PCEISYADRA GKYMGQQGVT LPRL
Length:184
Mass (Da):20,509
Last modified:July 10, 2007 - v1
Checksum:i6A19F9012BAC2355
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000699 Genomic DNA. Translation: ABQ70394.1.
RefSeqiYP_001264532.1. NC_009511.1.

Genome annotation databases

EnsemblBacteriaiABQ70394; ABQ70394; Swit_4050.
GeneIDi5200872.
KEGGiswi:Swit_4050.
PATRICi23687387. VBISphWit55028_4622.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000699 Genomic DNA. Translation: ABQ70394.1 .
RefSeqi YP_001264532.1. NC_009511.1.

3D structure databases

ProteinModelPortali A5VDM8.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 392499.Swit_4050.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ABQ70394 ; ABQ70394 ; Swit_4050 .
GeneIDi 5200872.
KEGGi swi:Swit_4050.
PATRICi 23687387. VBISphWit55028_4622.

Phylogenomic databases

eggNOGi COG0717.
HOGENOMi HOG000228600.
KOi K01494.
OMAi EFEGHIT.
OrthoDBi EOG67DPKR.

Enzyme and pathway databases

UniPathwayi UPA00610 ; UER00665 .
BioCyci SWIT392499:GHZK-4099-MONOMER.

Family and domain databases

Gene3Di 2.70.40.10. 1 hit.
HAMAPi MF_00146. dCTP_deaminase.
InterProi IPR011962. dCTP_deam.
IPR029054. dUTPase-like.
IPR008180. dUTPase/dCTP_deaminase.
[Graphical view ]
Pfami PF00692. dUTPase. 1 hit.
[Graphical view ]
SUPFAMi SSF51283. SSF51283. 1 hit.
TIGRFAMsi TIGR02274. dCTP_deam. 1 hit.
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: RW1 / DSM 6014 / JCM 10273.

Entry informationi

Entry nameiDCD_SPHWW
AccessioniPrimary (citable) accession number: A5VDM8
Entry historyi
Integrated into UniProtKB/Swiss-Prot: January 15, 2008
Last sequence update: July 10, 2007
Last modified: October 29, 2014
This is version 49 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. PATHWAY comments
    Index of metabolic and biosynthesis pathways
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3