A5VDL4 (A5VDL4_SPHWW) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
PEP-CTERM locus, polysaccharide deactylase EMBL ABQ70380.1

Gene names

Ordered Locus Names:

Swit_4036

Organism

Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) [Complete proteome] [HAMAP]

Taxonomic identifier

392499 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Alphaproteobacteria › Sphingomonadales › Sphingomonadaceae › Sphingomonas

Protein attributes

Sequence length	292 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	carbohydrate metabolic process Inferred from electronic annotation. Source: InterPro
Molecular function	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	A5VDL4 [UniParc]. Last modified July 10, 2007. Version 1. Checksum: 6DA1750125D7E2BF	FASTA	292	33,180
	10 20 30 40 50 60 MAATRTRPDP SMVTNGLSVD IEDWFQVGAF ERTIRREDWD ALTPRVERNS DAVIDLFGRM 70 80 90 100 110 120 GARATFFTLG WVAERYPALI RRIVDAGHEL ASHGWDHLRV FTMTPAQFRE DLRRTRAVLE 130 140 150 160 170 180 DLSGRKVTGY RAPSFSIDER TPWAHEILAE EGYAYSSSVA PVVHDHYGWP EAPRFAFRPV 190 200 210 220 230 240 AGSALVELPV TTARLGRRIV AAGGGGFFRL FPYAFSRWAI RQVNGERQPA IFYFHPWEID 250 260 270 280 290 PGQPRVADAP FKSKLRHYAR LGAMEGKLER VIRDFRWDRI DHLVAAEAAK GG

References

[1]

"Complete sequence of chromosome of Sphingomonas wittichii RW1." Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Saunders E., Brettin T., Bruce D., Detter J.C., Han C., Tapia R., Gilna P., Schmutz J., Larimer F., Land M. , Hauser L., Kyrpides N., Kim E., Halden R.U., Miller T.R., Salzberg S.L., Eisen J.A., Richardson P. Submitted (MAY-2007) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: RW1 / DSM 6014 / JCM 10273.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000699 Genomic DNA. Translation: ABQ70380.1.
RefSeq	YP_001264518.1. NC_009511.1.
3D structure databases
ProteinModelPortal	A5VDL4.
ModBase	Search...
Protein-protein interaction databases
STRING	A5VDL4.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	5198833.
GenomeReviews	Gene locus Swit_4036 in contig CP000699_GR.
KEGG	swi:Swit_4036.
PATRIC	23687359. VBISphWit55028_4608.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0726.
HOGENOM	HBG612640.
OMA	VEDYFQV.
ProtClustDB	CLSK843957.
Family and domain databases
InterPro	IPR022560. DUF3473. IPR011330. Glyco_hydro/deAcase_b/a-brl. IPR014344. PEP-CTERM_polysacc_deacetyl. IPR002509. Polysac_deacetylase. [Graphical view]
Gene3D	G3DSA:3.20.20.370. Polysac_deacetylase. 2 hits.
Pfam	PF11959. DUF3473. 1 hit. PF01522. Polysacc_deac_1. 1 hit. [Graphical view]
SUPFAM	SSF88713. Glyco_hydro/deAcase_b/a-brl. 1 hit.
TIGRFAMs	TIGR03006. PepC_polyde. 1 hit.
ProtoNet	Search...

Entry information

Entry name

A5VDL4_SPHWW

Accession

Primary (citable) accession number: A5VDL4

Entry history

Integrated into UniProtKB/TrEMBL:	July 10, 2007
Last sequence update:	July 10, 2007
Last modified:	December 14, 2011
This is version 25 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)