Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Basket 0
(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

A5VDG1

- A5VDG1_SPHWW

UniProt

A5VDG1 - A5VDG1_SPHWW

Protein
Submitted name:

DNA ligase D

Gene

Swit_3982

Organism
Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
    • BLAST
    • Align
    • Format
    • Add to basket
    • History
      Entry version 47 (01 Oct 2014)
      Sequence version 1 (10 Jul 2007)
      Previous versions | rss
    • Help video
    • Feedback
    • Comment

    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro
    3. DNA primase activity Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciSWIT392499:GHZK-4029-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    DNA ligase DImported
    Gene namesi
    Ordered Locus Names:Swit_3982Imported
    OrganismiSphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273)Imported
    Taxonomic identifieri392499 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaSphingomonadalesSphingomonadaceaeSphingomonas
    ProteomesiUP000001989: Chromosome

    Interactioni

    Protein-protein interaction databases

    STRINGi392499.Swit_3982.

    Structurei

    3D structure databases

    ProteinModelPortaliA5VDG1.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    eggNOGiCOG3285.
    HOGENOMiHOG000222509.
    KOiK01971.
    OMAiDWTIRSI.
    OrthoDBiEOG661H49.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    A5VDG1-1 [UniParc]FASTAAdd to Basket

    « Hide

    MARLDEYNRK RDFAKTREPA GTLETRGRHR FIVQKHDATR LHYDFRLEMD    50
    GVLKSWAVTR GPSLDPDDKR LAVRTEDHPV SYGGFEGTIP EGEYGGGTVM 100
    LWDEGSWAPI AGKSERDLDK GHLHFTLDGH RMKGEWLLVR IKGRPGEKRE 150
    NWLLRKIDDG EAGGSDDLVA HALTSVKTGR TMAQIAADKA GESSLKGKRG 200
    KAFDAIMAKS DAHNARVARR PAKGKPSTTP PPAFRKPQLA TLVDHVPTGG 250
    AWIHEIKFDG YRALVAVAGD RVKIFTRTGL DWTDRFAPVA EAVAALGLPP 300
    ALIDGEIVSL DGAGNPSFSA LQKAIKGEGG GGGGFELFAF DLLSLDGDDL 350
    TGLGTVERKA RLAGLLPRSH PMIHYADHVV GAGEKLFDAM CRAGQEGIIS 400
    KRADARYRAG RTTNWLKTKC TRRQEFVIIG WSRSDSAARP FRALLLAQQG 450
    EDGLVYAGKV GTGFDRATME MLAEKFVARA RKTPPADVPR AEARGTSWVR 500
    PDLVAEIGFA EFTDEGILRQ ASFIGLRSDK EAAEVTAEKP MPVEEAARPE 550
    EAPVKISNPD RVIFPEAKAT KGDLARYYQA VGPIILPWLA HRPVSLVRCP 600
    QGRAKQCFFQ KHDSGSFGEH VHHVPIREKD GKTEDYLYVD DVAGILACVQ 650
    MGTIEFHGWG SRVERIEMPD RMIFDLDPDV GLDFADVRTA AKDIRRLLSD 700
    IGLTSFAMLS GGKGVHVVVP LRPEAEWPAV KDFAHRFAEA MAQAEPDRFV 750
    ATMAKAKRVG RIFIDYLRNQ RGATAVVPYG ARARENAPVA APVAWNELDD 800
    FDKAGAFTIK DADRLLKRAS SKALKGWGVA DQVLPDL 837
    Length:837
    Mass (Da):91,817
    Last modified:July 10, 2007 - v1
    Checksum:i92BD109AF98E0FD7
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000699 Genomic DNA. Translation: ABQ70327.1.
    RefSeqiWP_012050166.1. NC_009511.1.
    YP_001264465.1. NC_009511.1.

    Genome annotation databases

    EnsemblBacteriaiABQ70327; ABQ70327; Swit_3982.
    GeneIDi5197631.
    KEGGiswi:Swit_3982.
    PATRICi23687243. VBISphWit55028_4552.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000699 Genomic DNA. Translation: ABQ70327.1 .
    RefSeqi WP_012050166.1. NC_009511.1.
    YP_001264465.1. NC_009511.1.

    3D structure databases

    ProteinModelPortali A5VDG1.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 392499.Swit_3982.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ABQ70327 ; ABQ70327 ; Swit_3982 .
    GeneIDi 5197631.
    KEGGi swi:Swit_3982.
    PATRICi 23687243. VBISphWit55028_4552.

    Phylogenomic databases

    eggNOGi COG3285.
    HOGENOMi HOG000222509.
    KOi K01971.
    OMAi DWTIRSI.
    OrthoDBi EOG661H49.

    Enzyme and pathway databases

    BioCyci SWIT392499:GHZK-4029-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: RW1 / DSM 6014 / JCM 10273Imported.

    Entry informationi

    Entry nameiA5VDG1_SPHWW
    AccessioniPrimary (citable) accession number: A5VDG1
    Entry historyi
    Integrated into UniProtKB/TrEMBL: July 10, 2007
    Last sequence update: July 10, 2007
    Last modified: October 1, 2014
    This is version 47 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3