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A5VDG1 (A5VDG1_SPHWW) Unreviewed, UniProtKB/TrEMBL

Last modified May 14, 2014. Version 45. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein attributes

Sequence length837 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Sequences

Sequence LengthMass (Da)Tools
A5VDG1 [UniParc].

Last modified July 10, 2007. Version 1.
Checksum: 92BD109AF98E0FD7

FASTA83791,817
        10         20         30         40         50         60 
MARLDEYNRK RDFAKTREPA GTLETRGRHR FIVQKHDATR LHYDFRLEMD GVLKSWAVTR 

        70         80         90        100        110        120 
GPSLDPDDKR LAVRTEDHPV SYGGFEGTIP EGEYGGGTVM LWDEGSWAPI AGKSERDLDK 

       130        140        150        160        170        180 
GHLHFTLDGH RMKGEWLLVR IKGRPGEKRE NWLLRKIDDG EAGGSDDLVA HALTSVKTGR 

       190        200        210        220        230        240 
TMAQIAADKA GESSLKGKRG KAFDAIMAKS DAHNARVARR PAKGKPSTTP PPAFRKPQLA 

       250        260        270        280        290        300 
TLVDHVPTGG AWIHEIKFDG YRALVAVAGD RVKIFTRTGL DWTDRFAPVA EAVAALGLPP 

       310        320        330        340        350        360 
ALIDGEIVSL DGAGNPSFSA LQKAIKGEGG GGGGFELFAF DLLSLDGDDL TGLGTVERKA 

       370        380        390        400        410        420 
RLAGLLPRSH PMIHYADHVV GAGEKLFDAM CRAGQEGIIS KRADARYRAG RTTNWLKTKC 

       430        440        450        460        470        480 
TRRQEFVIIG WSRSDSAARP FRALLLAQQG EDGLVYAGKV GTGFDRATME MLAEKFVARA 

       490        500        510        520        530        540 
RKTPPADVPR AEARGTSWVR PDLVAEIGFA EFTDEGILRQ ASFIGLRSDK EAAEVTAEKP 

       550        560        570        580        590        600 
MPVEEAARPE EAPVKISNPD RVIFPEAKAT KGDLARYYQA VGPIILPWLA HRPVSLVRCP 

       610        620        630        640        650        660 
QGRAKQCFFQ KHDSGSFGEH VHHVPIREKD GKTEDYLYVD DVAGILACVQ MGTIEFHGWG 

       670        680        690        700        710        720 
SRVERIEMPD RMIFDLDPDV GLDFADVRTA AKDIRRLLSD IGLTSFAMLS GGKGVHVVVP 

       730        740        750        760        770        780 
LRPEAEWPAV KDFAHRFAEA MAQAEPDRFV ATMAKAKRVG RIFIDYLRNQ RGATAVVPYG 

       790        800        810        820        830 
ARARENAPVA APVAWNELDD FDKAGAFTIK DADRLLKRAS SKALKGWGVA DQVLPDL 

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References

[1]"Complete sequence of chromosome of Sphingomonas wittichii RW1."
US DOE Joint Genome Institute
Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Saunders E., Brettin T., Bruce D., Detter J.C., Han C., Tapia R., Gilna P., Schmutz J., Larimer F., Land M. expand/collapse author list , Hauser L., Kyrpides N., Kim E., Halden R.U., Miller T.R., Salzberg S.L., Eisen J.A., Richardson P.
Submitted (MAY-2007) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: RW1 / DSM 6014 / JCM 10273.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000699 Genomic DNA. Translation: ABQ70327.1.
RefSeqYP_001264465.1. NC_009511.1.

3D structure databases

ProteinModelPortalA5VDG1.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING392499.Swit_3982.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABQ70327; ABQ70327; Swit_3982.
GeneID5197631.
KEGGswi:Swit_3982.
PATRIC23687243. VBISphWit55028_4552.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG3285.
HOGENOMHOG000222509.
KOK01971.
OMADWTIRSI.
OrthoDBEOG661H49.

Enzyme and pathway databases

BioCycSWIT392499:GHZK-4029-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameA5VDG1_SPHWW
AccessionPrimary (citable) accession number: A5VDG1
Entry history
Integrated into UniProtKB/TrEMBL: July 10, 2007
Last sequence update: July 10, 2007
Last modified: May 14, 2014
This is version 45 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)