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Protein
Submitted name:

DNA ligase D

Gene

Swit_3982

Organism
Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro
  3. DNA primase activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciSWIT392499:GHZK-4029-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligase DImported
Gene namesi
Ordered Locus Names:Swit_3982Imported
OrganismiSphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273)Imported
Taxonomic identifieri392499 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaSphingomonadalesSphingomonadaceaeSphingomonas
ProteomesiUP000001989: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi392499.Swit_3982.

Structurei

3D structure databases

ProteinModelPortaliA5VDG1.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiDWTIRSI.
OrthoDBiEOG661H49.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A5VDG1-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MARLDEYNRK RDFAKTREPA GTLETRGRHR FIVQKHDATR LHYDFRLEMD
60 70 80 90 100
GVLKSWAVTR GPSLDPDDKR LAVRTEDHPV SYGGFEGTIP EGEYGGGTVM
110 120 130 140 150
LWDEGSWAPI AGKSERDLDK GHLHFTLDGH RMKGEWLLVR IKGRPGEKRE
160 170 180 190 200
NWLLRKIDDG EAGGSDDLVA HALTSVKTGR TMAQIAADKA GESSLKGKRG
210 220 230 240 250
KAFDAIMAKS DAHNARVARR PAKGKPSTTP PPAFRKPQLA TLVDHVPTGG
260 270 280 290 300
AWIHEIKFDG YRALVAVAGD RVKIFTRTGL DWTDRFAPVA EAVAALGLPP
310 320 330 340 350
ALIDGEIVSL DGAGNPSFSA LQKAIKGEGG GGGGFELFAF DLLSLDGDDL
360 370 380 390 400
TGLGTVERKA RLAGLLPRSH PMIHYADHVV GAGEKLFDAM CRAGQEGIIS
410 420 430 440 450
KRADARYRAG RTTNWLKTKC TRRQEFVIIG WSRSDSAARP FRALLLAQQG
460 470 480 490 500
EDGLVYAGKV GTGFDRATME MLAEKFVARA RKTPPADVPR AEARGTSWVR
510 520 530 540 550
PDLVAEIGFA EFTDEGILRQ ASFIGLRSDK EAAEVTAEKP MPVEEAARPE
560 570 580 590 600
EAPVKISNPD RVIFPEAKAT KGDLARYYQA VGPIILPWLA HRPVSLVRCP
610 620 630 640 650
QGRAKQCFFQ KHDSGSFGEH VHHVPIREKD GKTEDYLYVD DVAGILACVQ
660 670 680 690 700
MGTIEFHGWG SRVERIEMPD RMIFDLDPDV GLDFADVRTA AKDIRRLLSD
710 720 730 740 750
IGLTSFAMLS GGKGVHVVVP LRPEAEWPAV KDFAHRFAEA MAQAEPDRFV
760 770 780 790 800
ATMAKAKRVG RIFIDYLRNQ RGATAVVPYG ARARENAPVA APVAWNELDD
810 820 830
FDKAGAFTIK DADRLLKRAS SKALKGWGVA DQVLPDL
Length:837
Mass (Da):91,817
Last modified:July 10, 2007 - v1
Checksum:i92BD109AF98E0FD7
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000699 Genomic DNA. Translation: ABQ70327.1.
RefSeqiWP_012050166.1. NC_009511.1.
YP_001264465.1. NC_009511.1.

Genome annotation databases

EnsemblBacteriaiABQ70327; ABQ70327; Swit_3982.
GeneIDi5197631.
KEGGiswi:Swit_3982.
PATRICi23687243. VBISphWit55028_4552.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000699 Genomic DNA. Translation: ABQ70327.1.
RefSeqiWP_012050166.1. NC_009511.1.
YP_001264465.1. NC_009511.1.

3D structure databases

ProteinModelPortaliA5VDG1.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi392499.Swit_3982.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABQ70327; ABQ70327; Swit_3982.
GeneIDi5197631.
KEGGiswi:Swit_3982.
PATRICi23687243. VBISphWit55028_4552.

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiDWTIRSI.
OrthoDBiEOG661H49.

Enzyme and pathway databases

BioCyciSWIT392499:GHZK-4029-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: RW1 / DSM 6014 / JCM 10273Imported.

Entry informationi

Entry nameiA5VDG1_SPHWW
AccessioniPrimary (citable) accession number: A5VDG1
Entry historyi
Integrated into UniProtKB/TrEMBL: July 10, 2007
Last sequence update: July 10, 2007
Last modified: January 7, 2015
This is version 48 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.