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A5VDG1

- A5VDG1_SPHWW

UniProt

A5VDG1 - A5VDG1_SPHWW

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Protein
Submitted name:

DNA ligase D

Gene
Swit_3982
Organism
Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro
  3. DNA primase activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciSWIT392499:GHZK-4029-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligase DImported
Gene namesi
Ordered Locus Names:Swit_3982Imported
OrganismiSphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273)Imported
Taxonomic identifieri392499 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaSphingomonadalesSphingomonadaceaeSphingomonas
ProteomesiUP000001989: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi392499.Swit_3982.

Structurei

3D structure databases

ProteinModelPortaliA5VDG1.

Family & Domainsi

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiDWTIRSI.
OrthoDBiEOG661H49.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A5VDG1-1 [UniParc]FASTAAdd to Basket

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MARLDEYNRK RDFAKTREPA GTLETRGRHR FIVQKHDATR LHYDFRLEMD    50
GVLKSWAVTR GPSLDPDDKR LAVRTEDHPV SYGGFEGTIP EGEYGGGTVM 100
LWDEGSWAPI AGKSERDLDK GHLHFTLDGH RMKGEWLLVR IKGRPGEKRE 150
NWLLRKIDDG EAGGSDDLVA HALTSVKTGR TMAQIAADKA GESSLKGKRG 200
KAFDAIMAKS DAHNARVARR PAKGKPSTTP PPAFRKPQLA TLVDHVPTGG 250
AWIHEIKFDG YRALVAVAGD RVKIFTRTGL DWTDRFAPVA EAVAALGLPP 300
ALIDGEIVSL DGAGNPSFSA LQKAIKGEGG GGGGFELFAF DLLSLDGDDL 350
TGLGTVERKA RLAGLLPRSH PMIHYADHVV GAGEKLFDAM CRAGQEGIIS 400
KRADARYRAG RTTNWLKTKC TRRQEFVIIG WSRSDSAARP FRALLLAQQG 450
EDGLVYAGKV GTGFDRATME MLAEKFVARA RKTPPADVPR AEARGTSWVR 500
PDLVAEIGFA EFTDEGILRQ ASFIGLRSDK EAAEVTAEKP MPVEEAARPE 550
EAPVKISNPD RVIFPEAKAT KGDLARYYQA VGPIILPWLA HRPVSLVRCP 600
QGRAKQCFFQ KHDSGSFGEH VHHVPIREKD GKTEDYLYVD DVAGILACVQ 650
MGTIEFHGWG SRVERIEMPD RMIFDLDPDV GLDFADVRTA AKDIRRLLSD 700
IGLTSFAMLS GGKGVHVVVP LRPEAEWPAV KDFAHRFAEA MAQAEPDRFV 750
ATMAKAKRVG RIFIDYLRNQ RGATAVVPYG ARARENAPVA APVAWNELDD 800
FDKAGAFTIK DADRLLKRAS SKALKGWGVA DQVLPDL 837
Length:837
Mass (Da):91,817
Last modified:July 10, 2007 - v1
Checksum:i92BD109AF98E0FD7
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000699 Genomic DNA. Translation: ABQ70327.1.
RefSeqiWP_012050166.1. NC_009511.1.
YP_001264465.1. NC_009511.1.

Genome annotation databases

EnsemblBacteriaiABQ70327; ABQ70327; Swit_3982.
GeneIDi5197631.
KEGGiswi:Swit_3982.
PATRICi23687243. VBISphWit55028_4552.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000699 Genomic DNA. Translation: ABQ70327.1 .
RefSeqi WP_012050166.1. NC_009511.1.
YP_001264465.1. NC_009511.1.

3D structure databases

ProteinModelPortali A5VDG1.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 392499.Swit_3982.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ABQ70327 ; ABQ70327 ; Swit_3982 .
GeneIDi 5197631.
KEGGi swi:Swit_3982.
PATRICi 23687243. VBISphWit55028_4552.

Phylogenomic databases

eggNOGi COG3285.
HOGENOMi HOG000222509.
KOi K01971.
OMAi DWTIRSI.
OrthoDBi EOG661H49.

Enzyme and pathway databases

BioCyci SWIT392499:GHZK-4029-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: RW1 / DSM 6014 / JCM 10273.

Entry informationi

Entry nameiA5VDG1_SPHWW
AccessioniPrimary (citable) accession number: A5VDG1
Entry historyi
Integrated into UniProtKB/TrEMBL: July 10, 2007
Last sequence update: July 10, 2007
Last modified: September 3, 2014
This is version 46 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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