A5VD58 (A5VD58_SPHWW) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
Cytochrome c oxidase assembly protein CtaG HAMAP MF_00155

Gene names

Name:	ctaG HAMAP MF_00155
Ordered Locus Names:	Swit_3879

Organism

Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) [Complete proteome] [HAMAP]

Taxonomic identifier

392499 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Alphaproteobacteria › Sphingomonadales › Sphingomonadaceae › Sphingomonas

Protein attributes

Sequence length	192 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is further processed into a mature form.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I By similarity. HAMAP MF_00155
Subcellular location	Cell inner membrane; Single-pass type II membrane protein; Periplasmic side By similarity HAMAP MF_00155.
Sequence similarities	Belongs to the COX11/CtaG family. HAMAP MF_00155

Ontologies

Keywords
Cellular component	Cell inner membrane HAMAP MF_00155 Cell membrane Membrane
Domain	Signal EMBL ABQ70224.1 Signal-anchor HAMAP MF_00155 Transmembrane Transmembrane helix HAMAP MF_00155
Ligand	Copper HAMAP MF_00155
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	respiratory chain complex IV assembly Inferred from electronic annotation. Source: HAMAP
Cellular component	integral to membrane Inferred from electronic annotation. Source: UniProtKB-KW plasma membrane Inferred from electronic annotation. Source: UniProtKB-SubCell
Molecular function	copper ion binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Signal peptide	1 – 33	33	Potential EMBL ABQ70224.1
	Chain	34 – 192	159	Potential EMBL ABQ70224.1		PRO_5000251110
Regions
	Topological domain	1 – 10	10	Cytoplasmic By similarity HAMAP MF_00155
	Transmembrane	11 – 33	23	Helical; Signal-anchor for type II membrane protein; By similarity HAMAP MF_00155
	Topological domain	34 – 192	159	Periplasmic By similarity HAMAP MF_00155

Sequences

	Sequence		Length	Mass (Da)
	A5VD58 [UniParc]. Last modified July 10, 2007. Version 1. Checksum: DBA6ECB28ED1428D	FASTA	192	20,675
	10 20 30 40 50 60 MSHALPPQQD RNLRVGLIAA AVALAMLGLG YAAVPLYRMF CQVTGFGGTT MRSETGIAPG 70 80 90 100 110 120 AVIGKLINVR FDANVAPSLP WSFAPEKRVA RIAIGARNMA FFTATNLSDH PITGTASFNV 130 140 150 160 170 180 TPELAGAYFT KIQCFCFTSQ TLKPGETIRM PVIYYVDPAI LKDKEAGKFN EITLSYTFFP 190 DKSAVDSERA GG

References

[1]

"Complete sequence of chromosome of Sphingomonas wittichii RW1." Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Saunders E., Brettin T., Bruce D., Detter J.C., Han C., Tapia R., Gilna P., Schmutz J., Larimer F., Land M. , Hauser L., Kyrpides N., Kim E., Halden R.U., Miller T.R., Salzberg S.L., Eisen J.A., Richardson P. Submitted (MAY-2007) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: RW1 / DSM 6014 / JCM 10273.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000699 Genomic DNA. Translation: ABQ70224.1.
RefSeq	YP_001264362.1. NC_009511.1.
3D structure databases
ProteinModelPortal	A5VD58.
ModBase	Search...
Protein-protein interaction databases
STRING	A5VD58.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	5196187.
GenomeReviews	Gene locus Swit_3879 in contig CP000699_GR.
KEGG	swi:Swit_3879.
NMPDR	fig|392499.4.peg.3961.
PATRIC	23687027. VBISphWit55028_4445.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG3175.
HOGENOM	HBG525908.
OMA	KLIFYRA.
ProtClustDB	PRK05089.
Family and domain databases
HAMAP	MF_00155. CtaG. [Tree]
InterPro	IPR023471. CtaG/Cox11_dom. IPR007533. Cyt_c_oxidase_assmbl_CtaG. [Graphical view]
Gene3D	G3DSA:2.60.370.10. CtaG_Cox11. 1 hit.
KO	K02258.
PANTHER	PTHR21320. CtaG_Cox11. 1 hit.
Pfam	PF04442. CtaG_Cox11. 1 hit. [Graphical view]
PIRSF	PIRSF005413. COX11. 1 hit.
SUPFAM	SSF110111. CtaG_Cox11. 1 hit.
ProtoNet	Search...

Entry information

Entry name

A5VD58_SPHWW

Accession

Primary (citable) accession number: A5VD58

Entry history

Integrated into UniProtKB/TrEMBL:	July 10, 2007
Last sequence update:	July 10, 2007
Last modified:	December 14, 2011
This is version 27 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)