A5VD02 (A5VD02_SPHWW) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
5-aminolevulinate synthase EMBL ABQ70168.1
EC=2.3.1.37 EMBL ABQ70168.1

Gene names

Ordered Locus Names:

Swit_3823

Organism

Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) [Complete proteome] [HAMAP]

Taxonomic identifier

392499 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Alphaproteobacteria › Sphingomonadales › Sphingomonadaceae › Sphingomonas

Protein attributes

Sequence length	404 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Cofactor	Pyridoxal phosphate By similarity. RuleBase RU003693
Sequence similarities	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. RuleBase RU003693

Ontologies

Keywords
Ligand	Pyridoxal phosphate RuleBase RU003693
Molecular function	Acyltransferase EMBL ABQ70168.1 Transferase
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	tetrapyrrole biosynthetic process Inferred from electronic annotation. Source: InterPro
Molecular function	5-aminolevulinate synthase activity Inferred from electronic annotation. Source: EC pyridoxal phosphate binding Inferred from electronic annotation. Source: InterPro transferase activity, transferring nitrogenous groups Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	A5VD02 [UniParc]. Last modified July 10, 2007. Version 1. Checksum: 81F67BB55558DEE5	FASTA	404	44,037
	10 20 30 40 50 60 MDYQRVFTQA IDRLHAEGRY RVFIDILRNK GMFPNARCFA GHNGPKPVTV WCSNDYLAMG 70 80 90 100 110 120 QHPKVIAAME EALHDVGAGS GGTRNIGGNT HYHVDLEHEL ADLHEKEGAL LFTSGYVSNE 130 140 150 160 170 180 ATLSTLAKVL PGCIIFSDEL NHASMIAGIR NSGCEKRVFR HNDLEHLEEL LAAEDPEAPK 190 200 210 220 230 240 LIAFESVYSM DGDIAPIHAI CDLADKYNAL TYLDEVHAVG MYGPRGGGIS DRDAAAKRLT 250 260 270 280 290 300 VIEGTLGKAF GVMGGYIAAD QMIIDVIRSY APGFIFTTSL SPVLVAGALA SVKHLKQSSA 310 320 330 340 350 360 ERDGQQAAAA TLKKMFADAG LPVMETTTHI VPLMVGDPVK AKKVSDILLA EYGVYVQPIN 370 380 390 400 YPTVPRGTER LRFTPGPAHS EEMMRELTQA LLEIWDRMEM KLAA

References

[1]

"Complete sequence of chromosome of Sphingomonas wittichii RW1." Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Saunders E., Brettin T., Bruce D., Detter J.C., Han C., Tapia R., Gilna P., Schmutz J., Larimer F., Land M. , Hauser L., Kyrpides N., Kim E., Halden R.U., Miller T.R., Salzberg S.L., Eisen J.A., Richardson P. Submitted (MAY-2007) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: RW1 / DSM 6014 / JCM 10273.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000699 Genomic DNA. Translation: ABQ70168.1.
RefSeq	YP_001264306.1. NC_009511.1.
3D structure databases
ProteinModelPortal	A5VD02.
SMR	A5VD02. Positions 2-395.
ModBase	Search...
Protein-protein interaction databases
STRING	A5VD02.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	5199229.
GenomeReviews	Gene locus Swit_3823 in contig CP000699_GR.
KEGG	swi:Swit_3823.
NMPDR	fig|392499.4.peg.3906.
PATRIC	23686905. VBISphWit55028_4384.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0156.
HOGENOM	HBG649839.
OMA	NARCFAG.
ProtClustDB	PRK09064.
Family and domain databases
InterPro	IPR010961. 4pyrrol_synth_NH2levulA_synth. IPR001917. Aminotrans_II_pyridoxalP_BS. IPR004839. Aminotransferase_I/II. IPR015424. PyrdxlP-dep_Trfase_major_dom. IPR015421. PyrdxlP-dep_Trfase_major_sub1. IPR015422. PyrdxlP-dep_Trfase_major_sub2. [Graphical view]
Gene3D	G3DSA:3.40.640.10. PyrdxlP-dep_Trfase_major_sub1. 1 hit. G3DSA:3.90.1150.10. PyrdxlP-dep_Trfase_major_sub2. 1 hit.
KO	K00643.
Pfam	PF00155. Aminotran_1_2. 1 hit. [Graphical view]
SUPFAM	SSF53383. PyrdxlP-dep_Trfase_major. 1 hit.
TIGRFAMs	TIGR01821. 5aminolev_synth. 1 hit.
PROSITE	PS00599. AA_TRANSFER_CLASS_2. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

A5VD02_SPHWW

Accession

Primary (citable) accession number: A5VD02

Entry history

Integrated into UniProtKB/TrEMBL:	July 10, 2007
Last sequence update:	July 10, 2007
Last modified:	December 14, 2011
This is version 32 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)