A5V270 (A5V270_SPHWW) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Alanine racemase EMBL ABQ66386.1
EC=5.1.1.1 EMBL ABQ66386.1

Gene names

Ordered Locus Names:

Swit_0013 EMBL ABQ66386.1

Organism

Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) [Complete proteome] [HAMAP] EMBL ABQ66386.1

Taxonomic identifier

392499 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Alphaproteobacteria › Sphingomonadales › Sphingomonadaceae › Sphingomonas › Sphingomonas wittichii

Protein attributes

Sequence length	348 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Catalytic activity	L-alanine = D-alanine. RuleBase RU000608 SAAS SAAS020622
Cofactor	Pyridoxal phosphate By similarity. RuleBase RU000608 SAAS SAAS020622
Pathway	Amino-acid biosynthesis; D-alanine biosynthesis; D-alanine from L-alanine: step 1/1. SAAS SAAS020622
Sequence similarities	Belongs to the alanine racemase family. RuleBase RU004188

Ontologies

Keywords
Ligand	Pyridoxal phosphate RuleBase RU000608 SAAS SAAS020622
Molecular function	Isomerase SAAS SAAS020622 RuleBase RU000608 EMBL ABQ66386.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	D-alanine biosynthetic process Inferred from electronic annotation. Source: UniProtKB-UniPathway
Molecular_function	alanine racemase activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	A5V270 [UniParc]. Last modified July 10, 2007. Version 1. Checksum: F8AF1C96FC5E9534	FASTA	348	37,236
	10 20 30 40 50 60 MTQEFLPLRL DLDPQALVAN WRWLGERAAA PAGAAIKADA YGLGAVEVSR RLADAGCRDF 70 80 90 100 110 120 FVATWAETEA LGSLPFGAGL SVLHGLREED LAAALASRAR PVLNSPAMVA RWKAAAPGRP 130 140 150 160 170 180 CDVMIDTGMN RLGLTVEEAC SGLLDGLEID LLLSHLACAD EPDSPMNERQ RARFVDLRGR 190 200 210 220 230 240 VAAKRHSLAN SAGACLGPAY GFDLIRPGIA LYGGIPRPEA RGHIVRVVRI EAQVLQVRDV 250 260 270 280 290 300 PAGDTIGYGA TFTAERPMRV AILNLGYADG YLRAFAGNGA ALVNGRRCPL AGRVSMDLIA 310 320 330 340 VDLTGADAAE GDWLEIDYAL ESAADRTGLS QYELLTGLGS RYQRRWKE

References

[1]

"Complete sequence of chromosome of Sphingomonas wittichii RW1." US DOE Joint Genome Institute Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Saunders E., Brettin T., Bruce D., Detter J.C., Han C., Tapia R., Gilna P., Schmutz J., Larimer F., Land M. , Hauser L., Kyrpides N., Kim E., Halden R.U., Miller T.R., Salzberg S.L., Eisen J.A., Richardson P. Submitted (MAY-2007) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: RW1 / DSM 6014 / JCM 10273.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000699 Genomic DNA. Translation: ABQ66386.1.
RefSeq	YP_001260524.1. NC_009511.1.
3D structure databases
ProteinModelPortal	A5V270.
ModBase	Search...
Protein-protein interaction databases
STRING	392499.Swit_0013.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ABQ66386; ABQ66386; Swit_0013.
GeneID	5200617.
KEGG	swi:Swit_0013.
PATRIC	23678976. VBISphWit55028_0464.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0787.
HOGENOM	HOG000031445.
KO	K01775.
OMA	DYHFDLC.
ProtClustDB	CLSK835466.
Enzyme and pathway databases
UniPathway	UPA00042; UER00497.
Family and domain databases
Gene3D	2.40.37.10. 1 hit.
HAMAP	MF_01201. Ala_racemase.
InterPro	IPR000821. Ala_racemase. IPR009006. Ala_racemase/Decarboxylase_C. IPR011079. Ala_racemase_C. IPR001608. Ala_racemase_N. IPR020622. Ala_racemase_pyridoxalP-BS. [Graphical view]
Pfam	PF00842. Ala_racemase_C. 1 hit. PF01168. Ala_racemase_N. 1 hit. [Graphical view]
PRINTS	PR00992. ALARACEMASE.
SMART	SM01005. Ala_racemase_C. 1 hit. [Graphical view]
SUPFAM	SSF50621. Racem_decarbox_C. 1 hit.
TIGRFAMs	TIGR00492. alr. 1 hit.
PROSITE	PS00395. ALANINE_RACEMASE. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

A5V270_SPHWW

Accession

Primary (citable) accession number: A5V270

Entry history

Integrated into UniProtKB/TrEMBL:	July 10, 2007
Last sequence update:	July 10, 2007
Last modified:	May 1, 2013
This is version 50 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)