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A5V1V8 (A5V1V8_ROSS1) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 40. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
RNA polymerase, sigma-24 subunit, ECF subfamily EMBL ABQ92861.1
Gene names
Ordered Locus Names:RoseRS_4530
OrganismRoseiflexus sp. (strain RS-1) [Complete proteome] [HAMAP] EMBL ABQ92861.1
Taxonomic identifier357808 [NCBI]
Taxonomic lineageBacteria › Chloroflexi › Chloroflexales › Chloroflexaceae › Roseiflexus

Protein attributes

Sequence length224 AA.
Sequence statusComplete.
Protein existencePredicted

Sequences

Sequence LengthMass (Da)Tools
A5V1V8 [UniParc].

Last modified July 10, 2007. Version 1.
Checksum: BF8AAE4E4B394CE4

FASTA22425,574
        10         20         30         40         50         60 
MAEPSAELIR RAQAGDPEAL THLVLSQQQY IYSIAMSVLK NPDDAADLTQ EAFIRLFRAL 

        70         80         90        100        110        120 
PQYNGESRFT TWLYRLVVNL GRDELRRRGR QAPLVSVPES DEDFDAIGTI ADDDRWSDPE 

       130        140        150        160        170        180 
VALDSQELRQ EVRRALDQLE EHYRLVLTLY YFEDMKYTDI AEILDLPLNT VKSHIRRGKE 

       190        200        210        220 
RLAAILQERE QPPAARALPV PKQPETGSSP FSPFMRLPAP VGGR

« Hide

References

[1]"Complete sequence of Roseiflexus sp. RS-1."
US DOE Joint Genome Institute
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Chertkov O., Brettin T., Bruce D., Han C., Schmutz J., Larimer F., Land M. expand/collapse author list , Hauser L., Kyrpides N., Mikhailova N., Bryant D.A., Richardson P.
Submitted (APR-2007) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: RS-1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000686 Genomic DNA. Translation: ABQ92861.1.
RefSeqYP_001278811.1. NC_009523.1.

3D structure databases

ProteinModelPortalA5V1V8.
ModBaseSearch...

Protein-protein interaction databases

STRING357808.RoseRS_4530.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABQ92861; ABQ92861; RoseRS_4530.
GeneID5211515.
KEGGrrs:RoseRS_4530.
PATRIC23357972. VBIRosSp109359_5013.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG1595.
HOGENOMHOG000094755.
KOK03088.
OMALEEHYRL.
ProtClustDBCLSK975385.

Enzyme and pathway databases

BioCycRSP357808:GH5Z-4583-MONOMER.

Family and domain databases

Gene3D1.10.10.10. 1 hit.
InterProIPR014284. RNA_pol_sigma-70_dom.
IPR007627. RNA_pol_sigma70_r2.
IPR013249. RNA_pol_sigma70_r4_t2.
IPR013325. RNA_pol_sigma_r2.
IPR013324. RNA_pol_sigma_r3_r4.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamPF04542. Sigma70_r2. 1 hit.
PF08281. Sigma70_r4_2. 1 hit.
[Graphical view]
SUPFAMSSF88946. Sigma_r2. 1 hit.
SSF88659. Sigma_r3_r4. 1 hit.
TIGRFAMsTIGR02937. sigma70-ECF. 1 hit.
ProtoNetSearch...

Entry information

Entry nameA5V1V8_ROSS1
AccessionPrimary (citable) accession number: A5V1V8
Entry history
Integrated into UniProtKB/TrEMBL: July 10, 2007
Last sequence update: July 10, 2007
Last modified: May 1, 2013
This is version 40 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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