A5V1G9 (A5V1G9_ROSS1) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
RNA polymerase, sigma-24 subunit, ECF subfamily EMBL ABQ92722.1

Gene names

Ordered Locus Names:

RoseRS_4389

Organism

Roseiflexus sp. (strain RS-1) [Complete proteome] [HAMAP] EMBL ABQ92722.1

Taxonomic identifier

357808 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Chloroflexi › Chloroflexi › Chloroflexales › Chloroflexaceae › Roseiflexus

Protein attributes

Sequence length	201 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Biological process	Transcription Transcription regulation
Ligand	DNA-binding SAAS SAAS013325
Molecular function	Sigma factor SAAS SAAS013325
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA-dependent transcription, initiation Inferred from electronic annotation. Source: InterPro
Molecular_function	DNA binding Inferred from electronic annotation. Source: UniProtKB-KW sequence-specific DNA binding transcription factor activity Inferred from electronic annotation. Source: InterPro sigma factor activity Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	A5V1G9 [UniParc]. Last modified July 10, 2007. Version 1. Checksum: D4308507C3CEF5E5	FASTA	201	22,451
	10 20 30 40 50 60 MANEELRLVE SAQRGDIESF NALVRLYEGR VYNLCYRLLG DAESAADAAQ DAFLSAYRHL 70 80 90 100 110 120 RAFRGGSFRS WVLRIATNVC YDALRARQRR SIVSLDAAVE TSSEEAAPLQ LADTAESPDE 130 140 150 160 170 180 FALRRELARA IEAGLAQLPV DQRLVVVLCD LQGLTYEEIA EVTGANVGTI KSRLSRGRAR 190 200 LRDVLRQGEL LPLRFRHEGE E

References

[1]

"Complete sequence of Roseiflexus sp. RS-1." US DOE Joint Genome Institute Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Chertkov O., Brettin T., Bruce D., Han C., Schmutz J., Larimer F., Land M. , Hauser L., Kyrpides N., Mikhailova N., Bryant D.A., Richardson P. Submitted (APR-2007) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: RS-1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000686 Genomic DNA. Translation: ABQ92722.1.
RefSeq	YP_001278672.1. NC_009523.1.
3D structure databases
ProteinModelPortal	A5V1G9.
ModBase	Search...
Protein-protein interaction databases
STRING	357808.RoseRS_4389.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ABQ92722; ABQ92722; RoseRS_4389.
GeneID	5211373.
KEGG	rrs:RoseRS_4389.
PATRIC	23357651. VBIRosSp109359_4854.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG1595.
HOGENOM	HOG000094755.
KO	K03088.
OMA	PLRFRHE.
ProtClustDB	CLSK975312.
Enzyme and pathway databases
BioCyc	RSP357808:GH5Z-4441-MONOMER.
Family and domain databases
Gene3D	1.10.10.10. 1 hit.
InterPro	IPR014284. RNA_pol_sigma-70_dom. IPR007627. RNA_pol_sigma70_r2. IPR013249. RNA_pol_sigma70_r4_t2. IPR013325. RNA_pol_sigma_r2. IPR013324. RNA_pol_sigma_r3_r4. IPR011991. WHTH_DNA-bd_dom. [Graphical view]
Pfam	PF04542. Sigma70_r2. 1 hit. PF08281. Sigma70_r4_2. 1 hit. [Graphical view]
SUPFAM	SSF88946. Sigma_r2. 1 hit. SSF88659. Sigma_r3_r4. 1 hit.
TIGRFAMs	TIGR02937. sigma70-ECF. 1 hit.
ProtoNet	Search...

Entry information

Entry name

A5V1G9_ROSS1

Accession

Primary (citable) accession number: A5V1G9

Entry history

Integrated into UniProtKB/TrEMBL:	July 10, 2007
Last sequence update:	July 10, 2007
Last modified:	May 29, 2013
This is version 42 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)