A5UYI5 (A5UYI5_ROSS1) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
50S ribosomal protein L1 HAMAP MF_01318

Gene names

Name:	rplA HAMAP MF_01318
Ordered Locus Names:	RoseRS_3327

Organism

Roseiflexus sp. (strain RS-1) [Complete proteome] [HAMAP] EMBL ABQ91688.1

Taxonomic identifier

357808 [NCBI]

Taxonomic lineage

Bacteria › Chloroflexi › Chloroflexales › Chloroflexaceae › Roseiflexus

Protein attributes

Sequence length	240 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release By similarity. HAMAP MF_01318 Protein L1 is also a translational repressor protein, it controls the translation of the L11 operon by binding to its mRNA By similarity. HAMAP MF_01318
Subunit structure	Part of the 50S ribosomal subunit By similarity. HAMAP MF_01318
Sequence similarities	Belongs to the ribosomal protein L1P family. HAMAP MF_01318

Ontologies

Keywords
Biological process	Translation regulation HAMAP MF_01318
Ligand	RNA-binding rRNA-binding HAMAP MF_01318 tRNA-binding HAMAP MF_01318
Molecular function	Repressor HAMAP MF_01318 Ribonucleoprotein Ribosomal protein HAMAP MF_01318 EMBL ABQ91688.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	regulation of translation Inferred from electronic annotation. Source: UniProtKB-KW translation Inferred from electronic annotation. Source: HAMAP
Cellular component	large ribosomal subunit Inferred from electronic annotation. Source: InterPro
Molecular function	rRNA binding Inferred from electronic annotation. Source: HAMAP structural constituent of ribosome Inferred from electronic annotation. Source: InterPro tRNA binding Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	A5UYI5 [UniParc]. Last modified July 10, 2007. Version 1. Checksum: A35A2C5A4FBF4AC6	FASTA	240	26,251
	10 20 30 40 50 60 MPRRHGKKYL EALKKIDRQR LYTPEEAIKL LKETSFTTFD PTVEVHLRLG IDPRHADQTI 70 80 90 100 110 120 RSTVSLPHGT GKTVRVLVFA QGEAAQAARE AGADFVGADD LIARIDKENF FDFDIAIATP 130 140 150 160 170 180 DMMGKVGRLG RKLGPRGLMP NPKSGTVVQP DDLPRTIREV RGGRVEFRND KTGLLHVAVG 190 200 210 220 230 240 KLSFNEQQIY ENIAALMEAV KAARPSAAKG TYIKSVTFTS TMSPGIRVDP SAAQAMSPAA

References

[1]

"Complete sequence of Roseiflexus sp. RS-1." Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Chertkov O., Brettin T., Bruce D., Han C., Schmutz J., Larimer F., Land M. , Hauser L., Kyrpides N., Mikhailova N., Bryant D.A., Richardson P. Submitted (APR-2007) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: RS-1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000686 Genomic DNA. Translation: ABQ91688.1.
RefSeq	YP_001277638.1. NC_009523.1.
3D structure databases
ProteinModelPortal	A5UYI5.
SMR	A5UYI5. Positions 7-232.
ModBase	Search...
Protein-protein interaction databases
STRING	A5UYI5.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	5210304.
GenomeReviews	Gene locus RoseRS_3327 in contig CP000686_GR.
KEGG	rrs:RoseRS_3327.
PATRIC	23355291. VBIRosSp109359_3683.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0081.
HOGENOM	HBG297400.
OMA	KAGTVTM.
ProtClustDB	PRK05424.
Enzyme and pathway databases
BioCyc	RSP357808:ROSERS_3327-MONOMER.
Family and domain databases
HAMAP	MF_01318_B. Ribosomal_L1_B. [Tree]
InterPro	IPR005878. Ribosom_L1_bac-type. IPR002143. Ribosomal_L1. IPR016094. Ribosomal_L1_2-a/b-sand. IPR016095. Ribosomal_L1_3-a/b-sand. IPR023673. Ribosomal_L1_CS. IPR023674. Ribosomal_L1_SF. [Graphical view]
Gene3D	G3DSA:3.30.190.20. Ribosomal_L1_2-a/b-sand. 2 hits. G3DSA:3.40.50.790. Ribosomal_L1_3-a/b-sand. 1 hit.
KO	K02863.
Pfam	PF00687. Ribosomal_L1. 1 hit. [Graphical view]
PIRSF	PIRSF002155. Ribosomal_L1. 1 hit.
SUPFAM	SSF56808. Ribosomal_L1. 1 hit.
TIGRFAMs	TIGR01169. RplA_bact. 1 hit.
PROSITE	PS01199. RIBOSOMAL_L1. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

A5UYI5_ROSS1

Accession

Primary (citable) accession number: A5UYI5

Entry history

Integrated into UniProtKB/TrEMBL:	July 10, 2007
Last sequence update:	July 10, 2007
Last modified:	December 14, 2011
This is version 35 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)