A5UN03 (A5UN03_METS3) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
DNA-directed RNA polymerase subunit F EMBL ABQ87581.1
EC=2.7.7.6 EMBL ABQ87581.1

Gene names

Ordered Locus Names:

Msm_1376

Organism

Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) [Complete proteome] [HAMAP] EMBL ABQ87581.1

Taxonomic identifier

420247 [NCBI]

Taxonomic lineage

Archaea › Euryarchaeota › Methanobacteria › Methanobacteriales › Methanobacteriaceae › Methanobrevibacter

Protein attributes

Sequence length	114 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Biological process	Transcription
Cellular component	DNA-directed RNA polymerase EMBL ABQ87581.1
Molecular function	Nucleotidyltransferase EMBL ABQ87581.1 Transferase
Technical term	Complete proteome
Gene Ontology (GO)
Molecular function	DNA-directed RNA polymerase activity Inferred from electronic annotation. Source: UniProtKB-KW nucleotide binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	A5UN03 [UniParc]. Last modified July 10, 2007. Version 1. Checksum: BF0B303F0108D4B2	FASTA	114	13,395
	10 20 30 40 50 60 MIGKKIIESE PIQSVKVKEA LEEFSQENEL NYEQNITLNH LSRFKRYSVE DSEKIISELK 70 80 90 100 110 DKIGLRHKVA VRIVDLIPQD LSDLRLIFAK EATHIEKEQM EDILEILDQY TIIE

References

[1]

"Genomic and metabolic adaptations of Methanobrevibacter smithii to the human gut." Samuel B.S., Hansen E.E., Manchester J.K., Coutinho P.M., Henrissat B., Fulton R., Latreille P., Kim K., Wilson R.K., Gordon J.I. Proc. Natl. Acad. Sci. U.S.A. 104:10643-10648(2007) [PubMed: 17563350] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000678 Genomic DNA. Translation: ABQ87581.1.
RefSeq	YP_001273949.1. NC_009515.1.
3D structure databases
ProteinModelPortal	A5UN03.
ModBase	Search...
Protein-protein interaction databases
STRING	A5UN03.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	5216870.
GenomeReviews	Gene locus Msm_1376 in contig CP000678_GR.
KEGG	msi:Msm_1376.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	arNOG11473.
HOGENOM	HBG321515.
OMA	CALDYLQ.
ProtClustDB	PRK14981.
Family and domain databases
InterPro	IPR010997. HRDC-like. IPR015906. HRDC-like_sub1. IPR015907. HRDC-like_sub2. IPR010924. RNA_pol_F_arc. IPR005574. RNA_pol_II_Rpb4. [Graphical view]
Gene3D	G3DSA:1.10.150.80. HRDC-like_sub1. 1 hit. G3DSA:1.10.287.420. HRDC-like_sub2. 1 hit.
KO	K03051.
Pfam	PF03874. RNA_pol_Rpb4. 1 hit. [Graphical view]
PIRSF	PIRSF005053. RNA_pol_F_arch. 1 hit.
SUPFAM	SSF47819. HRDC_like. 1 hit.
ProtoNet	Search...

Entry information

Entry name

A5UN03_METS3

Accession

Primary (citable) accession number: A5UN03

Entry history

Integrated into UniProtKB/TrEMBL:	July 10, 2007
Last sequence update:	July 10, 2007
Last modified:	November 16, 2011
This is version 24 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)