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A5UJR9 (A5UJR9_METS3) Unreviewed, UniProtKB/TrEMBL

Last modified November 16, 2011. Version 26. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Probable exosome complex exonuclease 1 HAMAP MF_00591
EC=3.1.13.- HAMAP MF_00591
Gene names
Ordered Locus Names:Msm_0242
OrganismMethanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) [Complete proteome] [HAMAP] EMBL ABQ86447.1
Taxonomic identifier420247 [NCBI]
Taxonomic lineageArchaea › Euryarchaeota › Methanobacteria › Methanobacteriales › Methanobacteriaceae › Methanobrevibacter

Protein attributes

Sequence length234 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Probably involved in the 3'->5' degradation of a variety of RNA species By similarity. HAMAP MF_00591

Subunit structure

Component of the archaeal exosome multienzyme ribonuclease complex By similarity. HAMAP MF_00591

Subcellular location

Cytoplasm By similarity HAMAP MF_00591.

Sequence similarities

Belongs to the RNase PH family. HAMAP MF_00591

Sequences

Sequence LengthMass (Da)Tools
A5UJR9 [UniParc].

Last modified July 10, 2007. Version 1.
Checksum: E2C8C81ED66837CD

FASTA23425,836
        10         20         30         40         50         60 
MMSEMIREDG RKYNELRPIK IEAGVLERAD GSAYLEVGGN KILVAVYGPR ESYIRRLLEP 

        70         80         90        100        110        120 
NTGVIRCRYN MAPFSVDDRK RPGPDRRSSE ISKITADALR PALMLENYPR SMVDIYIEVI 

       130        140        150        160        170        180 
EAEGGTRCAG ITAASVALVD AGIPMKDIVV GCAAGKVNDE IILDLSEVED KEGQADVPIA 

       190        200        210        220        230 
MMPRTGEITL LQSDGDLSQE EFEEAINLAM EGCRKVNEIQ KEALMKKYSA EMSD

« Hide

References

[1]"Genomic and metabolic adaptations of Methanobrevibacter smithii to the human gut."
Samuel B.S., Hansen E.E., Manchester J.K., Coutinho P.M., Henrissat B., Fulton R., Latreille P., Kim K., Wilson R.K., Gordon J.I.
Proc. Natl. Acad. Sci. U.S.A. 104:10643-10648(2007) [PubMed: 17563350] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000678 Genomic DNA. Translation: ABQ86447.1.
RefSeqYP_001272815.1. NC_009515.1.

3D structure databases

ProteinModelPortalA5UJR9.
SMRA5UJR9. Positions 3-229.
ModBaseSearch...

Protein-protein interaction databases

STRINGA5UJR9.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID5216606.
GenomeReviewsGene locus Msm_0242 in contig CP000678_GR.
KEGGmsi:Msm_0242.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGarNOG04562.
HOGENOMHBG737187.
OMAYVCASSA.
ProtClustDBPRK03983.

Family and domain databases

HAMAPMF_00591. Exosome_Exonucl_1.
[Tree]
InterProIPR011807. ExoRNase_exosome_complex.
IPR001247. ExoRNase_PH_dom1.
IPR015847. ExoRNase_PH_dom2.
IPR020568. Ribosomal_S5_D2-typ_fold.
[Graphical view]
KOK11600.
PfamPF01138. RNase_PH. 1 hit.
PF03725. RNase_PH_C. 1 hit.
[Graphical view]
SUPFAMSSF55666. 3_ExoRNase. 1 hit.
SSF54211. Ribosomal_S5_D2-typ_fold. 1 hit.
TIGRFAMsTIGR02065. ECX1. 1 hit.
ProtoNetSearch...

Entry information

Entry nameA5UJR9_METS3
AccessionPrimary (citable) accession number: A5UJR9
Entry history
Integrated into UniProtKB/TrEMBL: July 10, 2007
Last sequence update: July 10, 2007
Last modified: November 16, 2011
This is version 26 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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