A5UJK3 (A5UJK3_METS3) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Ribonuclease III (DsRNA-specific), Rnc EMBL ABQ86381.1
EC=3.1.26.3 EMBL ABQ86381.1

Gene names

Ordered Locus Names:

Msm_0176

Organism

Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) [Complete proteome] [HAMAP] EMBL ABQ86381.1

Taxonomic identifier

420247 [NCBI]

Taxonomic lineage

Archaea › Euryarchaeota › Methanobacteria › Methanobacteriales › Methanobacteriaceae › Methanobrevibacter

Protein attributes

Sequence length	223 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

Ontologies

Keywords
Molecular function	Hydrolase EMBL ABQ86381.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	RNA processing Inferred from electronic annotation. Source: InterPro rRNA catabolic process Inferred from electronic annotation. Source: InterPro
Cellular component	intracellular Inferred from electronic annotation. Source: InterPro
Molecular function	double-stranded RNA binding Inferred from electronic annotation. Source: InterPro ribonuclease III activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	A5UJK3 [UniParc]. Last modified July 10, 2007. Version 1. Checksum: D4517E5B15490848	FASTA	223	25,775
	10 20 30 40 50 60 MNLLEKFNIL PKDRHLYDVA FTHGSYGTKH GLDYTYERLE FLGDSVLNMI VSEYLYKQYP 70 80 90 100 110 120 DYEEGKLTKL RANYVCQTAL IYYSHELGLD KHIKIYGDDS KITENEVLSI TADVFESFLG 130 140 150 160 170 180 AIFLDQGIEF AKDYISKIIF PYIDAKKVFF FDYKSVIKEY GDAQEVDIEY KIIDECGVPH 190 200 210 220 NKTFIISILI DGKEMGVGKG KNKKEAEQAA SKQAMKKLKI QKY

References

[1]

"Genomic and metabolic adaptations of Methanobrevibacter smithii to the human gut." Samuel B.S., Hansen E.E., Manchester J.K., Coutinho P.M., Henrissat B., Fulton R., Latreille P., Kim K., Wilson R.K., Gordon J.I. Proc. Natl. Acad. Sci. U.S.A. 104:10643-10648(2007) [PubMed: 17563350] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000678 Genomic DNA. Translation: ABQ86381.1.
RefSeq	YP_001272749.1. NC_009515.1.
3D structure databases
ProteinModelPortal	A5UJK3.
ModBase	Search...
Protein-protein interaction databases
STRING	A5UJK3.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	5216395.
GenomeReviews	Gene locus Msm_0176 in contig CP000678_GR.
KEGG	msi:Msm_0176.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	arNOG12486.
HOGENOM	HBG744556.
OMA	SAYANLF.
ProtClustDB	CLSK2791084.
Family and domain databases
HAMAP	MF_00104. RNase_III. [Tree]
InterPro	IPR001159. Ds-RNA-bd. IPR014720. dsRNA-bd-like. IPR000999. RNase_III. IPR011907. RNase_III_bac. [Graphical view]
Gene3D	G3DSA:3.30.160.20. dsRNA-bd-like. 1 hit. G3DSA:1.10.1520.10. RNase_III. 1 hit.
KO	K03685.
PANTHER	PTHR11207. PTHR11207. 1 hit.
Pfam	PF00035. dsrm. 1 hit. PF00636. Ribonuclease_3. 1 hit. [Graphical view]
SMART	SM00358. DSRM. 1 hit. SM00535. RIBOc. 1 hit. [Graphical view]
SUPFAM	SSF69065. RNase_III. 1 hit.
TIGRFAMs	TIGR02191. RNaseIII. 1 hit.
PROSITE	PS50137. DS_RBD. 1 hit. PS00517. RNASE_3_1. 1 hit. PS50142. RNASE_3_2. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

A5UJK3_METS3

Accession

Primary (citable) accession number: A5UJK3

Entry history

Integrated into UniProtKB/TrEMBL:	July 10, 2007
Last sequence update:	July 10, 2007
Last modified:	December 14, 2011
This is version 33 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)