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A5IHI0

- RIMK_LEGPC

UniProt

A5IHI0 - RIMK_LEGPC

Protein

Probable alpha-L-glutamate ligase

Gene

rimK

Organism
Legionella pneumophila (strain Corby)
Status
Reviewed - Annotation score: 3 out of 5- Protein inferred from homologyi
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    • History
      Entry version 49 (01 Oct 2014)
      Sequence version 1 (26 Jun 2007)
      Previous versions | rss
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    Functioni

    Cofactori

    Binds 2 magnesium or manganese ions per subunit.UniRule annotation

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Binding sitei142 – 1421ATPUniRule annotation
    Binding sitei188 – 1881ATPUniRule annotation
    Metal bindingi249 – 2491Magnesium or manganese 1UniRule annotation
    Metal bindingi261 – 2611Magnesium or manganese 1UniRule annotation
    Metal bindingi261 – 2611Magnesium or manganese 2UniRule annotation
    Metal bindingi263 – 2631Magnesium or manganese 2UniRule annotation

    Regions

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Nucleotide bindingi179 – 1802ATPUniRule annotation
    Nucleotide bindingi212 – 2143ATPUniRule annotation

    GO - Molecular functioni

    1. acid-amino acid ligase activity Source: UniProtKB-HAMAP
    2. ATP binding Source: UniProtKB-HAMAP
    3. magnesium ion binding Source: UniProtKB-HAMAP
    4. manganese ion binding Source: UniProtKB-HAMAP

    GO - Biological processi

    1. cellular protein modification process Source: InterPro
    2. translation Source: UniProtKB-KW

    Keywords - Molecular functioni

    Ligase

    Keywords - Biological processi

    Protein biosynthesis

    Keywords - Ligandi

    ATP-binding, Magnesium, Manganese, Metal-binding, Nucleotide-binding

    Enzyme and pathway databases

    BioCyciLPNE400673:GCIT-483-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Probable alpha-L-glutamate ligaseUniRule annotation (EC:6.3.2.-UniRule annotation)
    Gene namesi
    Name:rimKUniRule annotation
    Ordered Locus Names:LPC_2929
    OrganismiLegionella pneumophila (strain Corby)
    Taxonomic identifieri400673 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaLegionellalesLegionellaceaeLegionella
    ProteomesiUP000001569: Chromosome

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 302302Probable alpha-L-glutamate ligasePRO_1000068844Add
    BLAST

    Proteomic databases

    PRIDEiA5IHI0.

    Interactioni

    Protein-protein interaction databases

    STRINGi400673.LPC_2929.

    Structurei

    3D structure databases

    ProteinModelPortaliA5IHI0.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Domains and Repeats

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Domaini105 – 288184ATP-graspUniRule annotationAdd
    BLAST

    Sequence similaritiesi

    Belongs to the RimK family.UniRule annotation
    Contains 1 ATP-grasp domain.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG0189.
    HOGENOMiHOG000293092.
    KOiK05844.
    OMAiCREPRLY.
    OrthoDBiEOG6DZDX8.

    Family and domain databases

    Gene3Di3.30.1490.20. 1 hit.
    3.30.470.20. 1 hit.
    3.40.50.20. 1 hit.
    HAMAPiMF_01552. RimK.
    InterProiIPR011761. ATP-grasp.
    IPR013651. ATP-grasp_RimK-type.
    IPR013815. ATP_grasp_subdomain_1.
    IPR013816. ATP_grasp_subdomain_2.
    IPR016185. PreATP-grasp_dom.
    IPR023533. Ribosomal_S6_modifier_RimK.
    IPR004666. RpS6_RimK/Lys_biosynth_LsyX.
    [Graphical view]
    PfamiPF08443. RimK. 1 hit.
    [Graphical view]
    TIGRFAMsiTIGR00768. rimK_fam. 1 hit.
    PROSITEiPS50975. ATP_GRASP. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    A5IHI0-1 [UniParc]FASTAAdd to Basket

    « Hide

    MKIAILATNP HLYSHKRLKA EAEAAGHEVK IINPLYCYMN VAASNPKVHY    50
    RGGAPLPHFD AVIPRIGASI TYYGTAVLRH METMGMYTLN ESIAISRSRD 100
    KFRSLQLLAR KGIPMPLTSF AQSPDDTEDL IHMVGGAPLV IKLLEGTQGK 150
    GVILADSHQS AVSIINAFKE MHANILVQEF IEESRGTDIR CFVIGEKVVA 200
    AVKRQAKDGE FRANVHQGGK AVKVKLSPQE RAIAVSAAKT MGLRVAGVDL 250
    IRSNHGPLVL EINSSPGLEG IEKATNINLA GKIIEYIEKK AKPISSNHRF 300
    HG 302
    Length:302
    Mass (Da):32,881
    Last modified:June 26, 2007 - v1
    Checksum:iDA9A2689AADD2B10
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000675 Genomic DNA. Translation: ABQ56830.1.
    RefSeqiYP_001252176.1. NC_009494.2.

    Genome annotation databases

    EnsemblBacteriaiABQ56830; ABQ56830; LPC_2929.
    GeneIDi5182707.
    KEGGilpc:LPC_2929.
    PATRICi22312455. VBILegPne45588_3031.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000675 Genomic DNA. Translation: ABQ56830.1 .
    RefSeqi YP_001252176.1. NC_009494.2.

    3D structure databases

    ProteinModelPortali A5IHI0.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 400673.LPC_2929.

    Proteomic databases

    PRIDEi A5IHI0.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ABQ56830 ; ABQ56830 ; LPC_2929 .
    GeneIDi 5182707.
    KEGGi lpc:LPC_2929.
    PATRICi 22312455. VBILegPne45588_3031.

    Phylogenomic databases

    eggNOGi COG0189.
    HOGENOMi HOG000293092.
    KOi K05844.
    OMAi CREPRLY.
    OrthoDBi EOG6DZDX8.

    Enzyme and pathway databases

    BioCyci LPNE400673:GCIT-483-MONOMER.

    Family and domain databases

    Gene3Di 3.30.1490.20. 1 hit.
    3.30.470.20. 1 hit.
    3.40.50.20. 1 hit.
    HAMAPi MF_01552. RimK.
    InterProi IPR011761. ATP-grasp.
    IPR013651. ATP-grasp_RimK-type.
    IPR013815. ATP_grasp_subdomain_1.
    IPR013816. ATP_grasp_subdomain_2.
    IPR016185. PreATP-grasp_dom.
    IPR023533. Ribosomal_S6_modifier_RimK.
    IPR004666. RpS6_RimK/Lys_biosynth_LsyX.
    [Graphical view ]
    Pfami PF08443. RimK. 1 hit.
    [Graphical view ]
    TIGRFAMsi TIGR00768. rimK_fam. 1 hit.
    PROSITEi PS50975. ATP_GRASP. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Identification and characterization of a new conjugation/ type IVA secretion system (trb/tra) of L. pneumophila Corby localized on a mobile genomic island."
      Gloeckner G., Albert-Weissenberger C., Weinmann E., Jacobi S., Schunder E., Steinert M., Buchrieser C., Hacker J., Heuner K.
      Submitted (NOV-2006) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: Corby.

    Entry informationi

    Entry nameiRIMK_LEGPC
    AccessioniPrimary (citable) accession number: A5IHI0
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: February 5, 2008
    Last sequence update: June 26, 2007
    Last modified: October 1, 2014
    This is version 49 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome

    Documents

    1. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3