A5IHI0 (RIMK_LEGPC) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
Ribosomal protein S6 modification protein

Gene names

Name:	rimK
Ordered Locus Names:	LPC_2929

Organism

Legionella pneumophila (strain Corby) [Complete proteome] [HAMAP]

Taxonomic identifier

400673 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Gammaproteobacteria › Legionellales › Legionellaceae › Legionella › Legionella pneumophila

Protein attributes

Sequence length	302 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Responsible for the addition of glutamate residues to the C-terminus of ribosomal protein S6 By similarity. HAMAP-Rule MF_01552
Cofactor	Binds 2 magnesium or manganese ions per subunit By similarity.
Sequence similarities	Belongs to the RimK family. Contains 1 ATP-grasp domain.

Ontologies

Keywords
Biological process	Protein biosynthesis
Ligand	ATP-binding Magnesium Manganese Metal-binding Nucleotide-binding
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	cellular protein modification process Inferred from electronic annotation. Source: InterPro translation Inferred from electronic annotation. Source: HAMAP
Molecular_function	ATP binding Inferred from electronic annotation. Source: HAMAP catalytic activity Inferred from electronic annotation. Source: InterPro magnesium ion binding Inferred from electronic annotation. Source: HAMAP manganese ion binding Inferred from electronic annotation. Source: HAMAP
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 302	302	Ribosomal protein S6 modification protein HAMAP-Rule MF_01552		PRO_1000068844
Regions
	Domain	105 – 288	184	ATP-grasp
	Nucleotide binding	178 – 188	11	ATP By similarity
Sites
	Metal binding	249	1	Magnesium or manganese 1 By similarity
	Metal binding	261	1	Magnesium or manganese 1 By similarity
	Metal binding	261	1	Magnesium or manganese 2 By similarity
	Metal binding	263	1	Magnesium or manganese 2 By similarity
	Binding site	142	1	ATP By similarity
	Binding site	204	1	ATP By similarity

Sequences

	Sequence		Length	Mass (Da)
	A5IHI0 [UniParc]. Last modified June 26, 2007. Version 1. Checksum: DA9A2689AADD2B10	FASTA	302	32,881
	10 20 30 40 50 60 MKIAILATNP HLYSHKRLKA EAEAAGHEVK IINPLYCYMN VAASNPKVHY RGGAPLPHFD 70 80 90 100 110 120 AVIPRIGASI TYYGTAVLRH METMGMYTLN ESIAISRSRD KFRSLQLLAR KGIPMPLTSF 130 140 150 160 170 180 AQSPDDTEDL IHMVGGAPLV IKLLEGTQGK GVILADSHQS AVSIINAFKE MHANILVQEF 190 200 210 220 230 240 IEESRGTDIR CFVIGEKVVA AVKRQAKDGE FRANVHQGGK AVKVKLSPQE RAIAVSAAKT 250 260 270 280 290 300 MGLRVAGVDL IRSNHGPLVL EINSSPGLEG IEKATNINLA GKIIEYIEKK AKPISSNHRF HG

References

[1]

"Identification and characterization of a new conjugation/ type IVA secretion system (trb/tra) of L. pneumophila Corby localized on a mobile genomic island." Gloeckner G., Albert-Weissenberger C., Weinmann E., Jacobi S., Schunder E., Steinert M., Buchrieser C., Hacker J., Heuner K. Submitted (NOV-2006) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: Corby.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000675 Genomic DNA. Translation: ABQ56830.1.
RefSeq	YP_001252176.1. NC_009494.2.
3D structure databases
ProteinModelPortal	A5IHI0.
ModBase	Search...
Protein-protein interaction databases
STRING	400673.LPC_2929.
Proteomic databases
PRIDE	A5IHI0.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ABQ56830; ABQ56830; LPC_2929.
GeneID	5182707.
KEGG	lpc:LPC_2929.
PATRIC	22312455. VBILegPne45588_3031.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0189.
HOGENOM	HOG000293092.
KO	K05844.
OMA	CREPRLY.
ProtClustDB	CLSK832163.
Family and domain databases
Gene3D	3.30.1490.20. 1 hit. 3.30.470.20. 1 hit. 3.40.50.20. 1 hit.
HAMAP	MF_01552. RimK.
InterPro	IPR011761. ATP-grasp. IPR013651. ATP-grasp_RimK-type. IPR013815. ATP_grasp_subdomain_1. IPR013816. ATP_grasp_subdomain_2. IPR016185. PreATP-grasp_dom. IPR023533. Ribosomal_S6_modifier_RimK. IPR004666. RpS6_RimK/Lys_biosynth_LsyX. [Graphical view]
Pfam	PF08443. RimK. 1 hit. [Graphical view]
TIGRFAMs	TIGR00768. rimK_fam. 1 hit.
PROSITE	PS50975. ATP_GRASP. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

RIMK_LEGPC

Accession

Primary (citable) accession number: A5IHI0

Entry history

Integrated into UniProtKB/Swiss-Prot:	February 5, 2008
Last sequence update:	June 26, 2007
Last modified:	May 1, 2013
This is version 42 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Prokaryotic Protein Annotation Program