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A5IHI0 (RIMK_LEGPC) Reviewed, UniProtKB/Swiss-Prot

Last modified March 19, 2014. Version 47. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Probable alpha-L-glutamate ligase

EC=6.3.2.-
Gene names
Name:rimK
Ordered Locus Names:LPC_2929
OrganismLegionella pneumophila (strain Corby) [Complete proteome] [HAMAP]
Taxonomic identifier400673 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaLegionellalesLegionellaceaeLegionella

Protein attributes

Sequence length302 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Cofactor

Binds 2 magnesium or manganese ions per subunit By similarity.

Sequence similarities

Belongs to the RimK family.

Contains 1 ATP-grasp domain.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 302302Probable alpha-L-glutamate ligase HAMAP-Rule MF_01552
PRO_1000068844

Regions

Domain105 – 288184ATP-grasp
Nucleotide binding179 – 1802ATP By similarity
Nucleotide binding212 – 2143ATP By similarity

Sites

Metal binding2491Magnesium or manganese 1 By similarity
Metal binding2611Magnesium or manganese 1 By similarity
Metal binding2611Magnesium or manganese 2 By similarity
Metal binding2631Magnesium or manganese 2 By similarity
Binding site1421ATP By similarity
Binding site1881ATP By similarity

Sequences

Sequence LengthMass (Da)Tools
A5IHI0 [UniParc].

Last modified June 26, 2007. Version 1.
Checksum: DA9A2689AADD2B10

FASTA30232,881
        10         20         30         40         50         60 
MKIAILATNP HLYSHKRLKA EAEAAGHEVK IINPLYCYMN VAASNPKVHY RGGAPLPHFD 

        70         80         90        100        110        120 
AVIPRIGASI TYYGTAVLRH METMGMYTLN ESIAISRSRD KFRSLQLLAR KGIPMPLTSF 

       130        140        150        160        170        180 
AQSPDDTEDL IHMVGGAPLV IKLLEGTQGK GVILADSHQS AVSIINAFKE MHANILVQEF 

       190        200        210        220        230        240 
IEESRGTDIR CFVIGEKVVA AVKRQAKDGE FRANVHQGGK AVKVKLSPQE RAIAVSAAKT 

       250        260        270        280        290        300 
MGLRVAGVDL IRSNHGPLVL EINSSPGLEG IEKATNINLA GKIIEYIEKK AKPISSNHRF 


HG 

« Hide

References

[1]"Identification and characterization of a new conjugation/ type IVA secretion system (trb/tra) of L. pneumophila Corby localized on a mobile genomic island."
Gloeckner G., Albert-Weissenberger C., Weinmann E., Jacobi S., Schunder E., Steinert M., Buchrieser C., Hacker J., Heuner K.
Submitted (NOV-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Corby.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000675 Genomic DNA. Translation: ABQ56830.1.
RefSeqYP_001252176.1. NC_009494.2.

3D structure databases

ProteinModelPortalA5IHI0.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING400673.LPC_2929.

Proteomic databases

PRIDEA5IHI0.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABQ56830; ABQ56830; LPC_2929.
GeneID5182707.
KEGGlpc:LPC_2929.
PATRIC22312455. VBILegPne45588_3031.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0189.
HOGENOMHOG000293092.
KOK05844.
OMACREPRLY.
OrthoDBEOG6DZDX8.
ProtClustDBCLSK832163.

Enzyme and pathway databases

BioCycLPNE400673:GCIT-483-MONOMER.

Family and domain databases

Gene3D3.30.1490.20. 1 hit.
3.30.470.20. 1 hit.
3.40.50.20. 1 hit.
HAMAPMF_01552. RimK.
InterProIPR011761. ATP-grasp.
IPR013651. ATP-grasp_RimK-type.
IPR013815. ATP_grasp_subdomain_1.
IPR013816. ATP_grasp_subdomain_2.
IPR016185. PreATP-grasp_dom.
IPR023533. Ribosomal_S6_modifier_RimK.
IPR004666. RpS6_RimK/Lys_biosynth_LsyX.
[Graphical view]
PfamPF08443. RimK. 1 hit.
[Graphical view]
TIGRFAMsTIGR00768. rimK_fam. 1 hit.
PROSITEPS50975. ATP_GRASP. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameRIMK_LEGPC
AccessionPrimary (citable) accession number: A5IHI0
Entry history
Integrated into UniProtKB/Swiss-Prot: February 5, 2008
Last sequence update: June 26, 2007
Last modified: March 19, 2014
This is version 47 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families