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A5IHI0

- RIMK_LEGPC

UniProt

A5IHI0 - RIMK_LEGPC

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Protein
Probable alpha-L-glutamate ligase
Gene
rimK, LPC_2929
Organism
Legionella pneumophila (strain Corby)
Status
Reviewed - Annotation score: 3 out of 5 - Protein inferred from homologyi

Functioni

Cofactori

Binds 2 magnesium or manganese ions per subunit By similarity.

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Binding sitei142 – 1421ATP By similarity
Binding sitei188 – 1881ATP By similarity
Metal bindingi249 – 2491Magnesium or manganese 1 By similarity
Metal bindingi261 – 2611Magnesium or manganese 1 By similarity
Metal bindingi261 – 2611Magnesium or manganese 2 By similarity
Metal bindingi263 – 2631Magnesium or manganese 2 By similarity

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Nucleotide bindingi179 – 1802ATP By similarity
Nucleotide bindingi212 – 2143ATP By similarity

GO - Molecular functioni

  1. ATP binding Source: UniProtKB-HAMAP
  2. acid-amino acid ligase activity Source: UniProtKB-HAMAP
  3. magnesium ion binding Source: UniProtKB-HAMAP
  4. manganese ion binding Source: UniProtKB-HAMAP

GO - Biological processi

  1. cellular protein modification process Source: InterPro
  2. translation Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

Ligase

Keywords - Biological processi

Protein biosynthesis

Keywords - Ligandi

ATP-binding, Magnesium, Manganese, Metal-binding, Nucleotide-binding

Enzyme and pathway databases

BioCyciLPNE400673:GCIT-483-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Probable alpha-L-glutamate ligase (EC:6.3.2.-)
Gene namesi
Name:rimK
Ordered Locus Names:LPC_2929
OrganismiLegionella pneumophila (strain Corby)
Taxonomic identifieri400673 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaLegionellalesLegionellaceaeLegionella
ProteomesiUP000001569: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 302302Probable alpha-L-glutamate ligaseUniRule annotation
PRO_1000068844Add
BLAST

Proteomic databases

PRIDEiA5IHI0.

Interactioni

Protein-protein interaction databases

STRINGi400673.LPC_2929.

Structurei

3D structure databases

ProteinModelPortaliA5IHI0.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini105 – 288184ATP-grasp
Add
BLAST

Sequence similaritiesi

Belongs to the RimK family.
Contains 1 ATP-grasp domain.

Phylogenomic databases

eggNOGiCOG0189.
HOGENOMiHOG000293092.
KOiK05844.
OMAiCREPRLY.
OrthoDBiEOG6DZDX8.

Family and domain databases

Gene3Di3.30.1490.20. 1 hit.
3.30.470.20. 1 hit.
3.40.50.20. 1 hit.
HAMAPiMF_01552. RimK.
InterProiIPR011761. ATP-grasp.
IPR013651. ATP-grasp_RimK-type.
IPR013815. ATP_grasp_subdomain_1.
IPR013816. ATP_grasp_subdomain_2.
IPR016185. PreATP-grasp_dom.
IPR023533. Ribosomal_S6_modifier_RimK.
IPR004666. RpS6_RimK/Lys_biosynth_LsyX.
[Graphical view]
PfamiPF08443. RimK. 1 hit.
[Graphical view]
TIGRFAMsiTIGR00768. rimK_fam. 1 hit.
PROSITEiPS50975. ATP_GRASP. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A5IHI0-1 [UniParc]FASTAAdd to Basket

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MKIAILATNP HLYSHKRLKA EAEAAGHEVK IINPLYCYMN VAASNPKVHY    50
RGGAPLPHFD AVIPRIGASI TYYGTAVLRH METMGMYTLN ESIAISRSRD 100
KFRSLQLLAR KGIPMPLTSF AQSPDDTEDL IHMVGGAPLV IKLLEGTQGK 150
GVILADSHQS AVSIINAFKE MHANILVQEF IEESRGTDIR CFVIGEKVVA 200
AVKRQAKDGE FRANVHQGGK AVKVKLSPQE RAIAVSAAKT MGLRVAGVDL 250
IRSNHGPLVL EINSSPGLEG IEKATNINLA GKIIEYIEKK AKPISSNHRF 300
HG 302
Length:302
Mass (Da):32,881
Last modified:June 26, 2007 - v1
Checksum:iDA9A2689AADD2B10
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000675 Genomic DNA. Translation: ABQ56830.1.
RefSeqiYP_001252176.1. NC_009494.2.

Genome annotation databases

EnsemblBacteriaiABQ56830; ABQ56830; LPC_2929.
GeneIDi5182707.
KEGGilpc:LPC_2929.
PATRICi22312455. VBILegPne45588_3031.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000675 Genomic DNA. Translation: ABQ56830.1 .
RefSeqi YP_001252176.1. NC_009494.2.

3D structure databases

ProteinModelPortali A5IHI0.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 400673.LPC_2929.

Proteomic databases

PRIDEi A5IHI0.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ABQ56830 ; ABQ56830 ; LPC_2929 .
GeneIDi 5182707.
KEGGi lpc:LPC_2929.
PATRICi 22312455. VBILegPne45588_3031.

Phylogenomic databases

eggNOGi COG0189.
HOGENOMi HOG000293092.
KOi K05844.
OMAi CREPRLY.
OrthoDBi EOG6DZDX8.

Enzyme and pathway databases

BioCyci LPNE400673:GCIT-483-MONOMER.

Family and domain databases

Gene3Di 3.30.1490.20. 1 hit.
3.30.470.20. 1 hit.
3.40.50.20. 1 hit.
HAMAPi MF_01552. RimK.
InterProi IPR011761. ATP-grasp.
IPR013651. ATP-grasp_RimK-type.
IPR013815. ATP_grasp_subdomain_1.
IPR013816. ATP_grasp_subdomain_2.
IPR016185. PreATP-grasp_dom.
IPR023533. Ribosomal_S6_modifier_RimK.
IPR004666. RpS6_RimK/Lys_biosynth_LsyX.
[Graphical view ]
Pfami PF08443. RimK. 1 hit.
[Graphical view ]
TIGRFAMsi TIGR00768. rimK_fam. 1 hit.
PROSITEi PS50975. ATP_GRASP. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Identification and characterization of a new conjugation/ type IVA secretion system (trb/tra) of L. pneumophila Corby localized on a mobile genomic island."
    Gloeckner G., Albert-Weissenberger C., Weinmann E., Jacobi S., Schunder E., Steinert M., Buchrieser C., Hacker J., Heuner K.
    Submitted (NOV-2006) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Corby.

Entry informationi

Entry nameiRIMK_LEGPC
AccessioniPrimary (citable) accession number: A5IHI0
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 5, 2008
Last sequence update: June 26, 2007
Last modified: May 14, 2014
This is version 48 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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