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A5IGR8

- DEOB_LEGPC

UniProt

A5IGR8 - DEOB_LEGPC

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Protein

Phosphopentomutase

Gene

deoB

Organism
Legionella pneumophila (strain Corby)
Status
Reviewed - Annotation score: 3 out of 5- Protein inferred from homologyi

Functioni

Phosphotransfer between the C1 and C5 carbon atoms of pentose.UniRule annotation

Catalytic activityi

Alpha-D-ribose 1-phosphate = D-ribose 5-phosphate.UniRule annotation
2-deoxy-alpha-D-ribose 1-phosphate = 2-deoxy-alpha-D-ribose 5-phosphate.UniRule annotation

Cofactori

Mn2+UniRule annotationNote: Binds 1 or 2 manganese ions.UniRule annotation

Pathwayi

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi11 – 111ManganeseUniRule annotation
Metal bindingi310 – 3101ManganeseUniRule annotation
Metal bindingi346 – 3461ManganeseUniRule annotation
Metal bindingi347 – 3471ManganeseUniRule annotation
Metal bindingi358 – 3581ManganeseUniRule annotation

GO - Molecular functioni

  1. magnesium ion binding Source: InterPro
  2. manganese ion binding Source: UniProtKB-HAMAP
  3. phosphopentomutase activity Source: UniProtKB-HAMAP

GO - Biological processi

  1. 5-phosphoribose 1-diphosphate biosynthetic process Source: UniProtKB-UniPathway
  2. cellular metabolic compound salvage Source: InterPro
  3. deoxyribonucleotide catabolic process Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Isomerase

Keywords - Ligandi

Manganese, Metal-binding

Enzyme and pathway databases

BioCyciLPNE400673:GCIT-752-MONOMER.
UniPathwayiUPA00087; UER00173.

Names & Taxonomyi

Protein namesi
Recommended name:
PhosphopentomutaseUniRule annotation (EC:5.4.2.7UniRule annotation)
Alternative name(s):
PhosphodeoxyribomutaseUniRule annotation
Gene namesi
Name:deoBUniRule annotation
Ordered Locus Names:LPC_2654
OrganismiLegionella pneumophila (strain Corby)
Taxonomic identifieri400673 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaLegionellalesLegionellaceaeLegionella
ProteomesiUP000001569: Chromosome

Subcellular locationi

Cytoplasm UniRule annotation

GO - Cellular componenti

  1. cytoplasm Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 407407PhosphopentomutasePRO_1000046390Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi400673.LPC_2654.

Structurei

3D structure databases

ProteinModelPortaliA5IGR8.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the phosphopentomutase family.UniRule annotation

Phylogenomic databases

eggNOGiCOG1015.
HOGENOMiHOG000008159.
KOiK01839.
OMAiEHTREHI.
OrthoDBiEOG6R5C7J.

Family and domain databases

Gene3Di3.30.70.1250. 1 hit.
3.40.720.10. 2 hits.
HAMAPiMF_00740. Phosphopentomut.
InterProiIPR017849. Alkaline_Pase-like_a/b/a.
IPR017850. Alkaline_phosphatase_core.
IPR010045. DeoB.
IPR006124. Metalloenzyme.
IPR024052. Phosphopentomutase_DeoB_cap.
[Graphical view]
PfamiPF01676. Metalloenzyme. 1 hit.
[Graphical view]
PIRSFiPIRSF001491. Ppentomutase. 1 hit.
SUPFAMiSSF143856. SSF143856. 1 hit.
SSF53649. SSF53649. 2 hits.
TIGRFAMsiTIGR01696. deoB. 1 hit.

Sequencei

Sequence statusi: Complete.

A5IGR8-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MTGRVCVLVM DSFGIGASLD AARYGDVGAN TLVHIYEACK RGECDIDGVR
60 70 80 90 100
KGSLMLPNLA SKGLYHAAMA SSGLPFIDLS ALAIPSGYYG YAVEQSLGKD
110 120 130 140 150
TPSGHWEMAG VPVTFEWGYF PDKPYCFPEE LISEFIKQCN LPGVLGEKHA
160 170 180 190 200
SGTIIIDELG EEHIRTGKPI VYTSADSVFQ IAAHEEAFGL QRLYDICKIA
210 220 230 240 250
RNLVDKYQIG RVIARPFAGK PGSFKRTGNR KDYATPPPEK TLLDFLKEDG
260 270 280 290 300
REVIAIGKIA DIYAHQGVTQ EIKADGNMAL FDATLSAMKT APQGSLVFTN
310 320 330 340 350
FVDFDSSYGH RRDVAGYAHA LEQFDARLPE LEVLLQPNDM VFIAADHGCD
360 370 380 390 400
PTFPGSDHTR EHIPVLMFGP QVNSKFIGRR DCFADIGQSI AEHLQLSSPL

AHGVSFL
Length:407
Mass (Da):44,441
Last modified:June 26, 2007 - v1
Checksum:i251B4A38FDDE8555
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000675 Genomic DNA. Translation: ABQ56568.1.
RefSeqiYP_001251914.1. NC_009494.2.

Genome annotation databases

EnsemblBacteriaiABQ56568; ABQ56568; LPC_2654.
GeneIDi5180479.
KEGGilpc:LPC_2654.
PATRICi22311893. VBILegPne45588_2757.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000675 Genomic DNA. Translation: ABQ56568.1 .
RefSeqi YP_001251914.1. NC_009494.2.

3D structure databases

ProteinModelPortali A5IGR8.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 400673.LPC_2654.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ABQ56568 ; ABQ56568 ; LPC_2654 .
GeneIDi 5180479.
KEGGi lpc:LPC_2654.
PATRICi 22311893. VBILegPne45588_2757.

Phylogenomic databases

eggNOGi COG1015.
HOGENOMi HOG000008159.
KOi K01839.
OMAi EHTREHI.
OrthoDBi EOG6R5C7J.

Enzyme and pathway databases

UniPathwayi UPA00087 ; UER00173 .
BioCyci LPNE400673:GCIT-752-MONOMER.

Family and domain databases

Gene3Di 3.30.70.1250. 1 hit.
3.40.720.10. 2 hits.
HAMAPi MF_00740. Phosphopentomut.
InterProi IPR017849. Alkaline_Pase-like_a/b/a.
IPR017850. Alkaline_phosphatase_core.
IPR010045. DeoB.
IPR006124. Metalloenzyme.
IPR024052. Phosphopentomutase_DeoB_cap.
[Graphical view ]
Pfami PF01676. Metalloenzyme. 1 hit.
[Graphical view ]
PIRSFi PIRSF001491. Ppentomutase. 1 hit.
SUPFAMi SSF143856. SSF143856. 1 hit.
SSF53649. SSF53649. 2 hits.
TIGRFAMsi TIGR01696. deoB. 1 hit.
ProtoNeti Search...

Publicationsi

  1. "Identification and characterization of a new conjugation/ type IVA secretion system (trb/tra) of L. pneumophila Corby localized on a mobile genomic island."
    Gloeckner G., Albert-Weissenberger C., Weinmann E., Jacobi S., Schunder E., Steinert M., Buchrieser C., Hacker J., Heuner K.
    Submitted (NOV-2006) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Corby.

Entry informationi

Entry nameiDEOB_LEGPC
AccessioniPrimary (citable) accession number: A5IGR8
Entry historyi
Integrated into UniProtKB/Swiss-Prot: January 15, 2008
Last sequence update: June 26, 2007
Last modified: November 26, 2014
This is version 51 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. PATHWAY comments
    Index of metabolic and biosynthesis pathways
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3