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A5I6H2 (A5I6H2_CLOBH) Unreviewed, UniProtKB/TrEMBL

Last modified December 14, 2011. Version 29. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
Polysaccharide deacetylase family protein EMBL ABS37054.1
Submitted name:
Probable polysaccharide deacetylase EMBL CAL84654.1
EC=3.-.-.- EMBL CAL84654.1
Gene names
Name:pdaA EMBL CAL84654.1
Ordered Locus Names:CBO3091, CLC_2993
OrganismClostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) [Complete proteome] [HAMAP]
Taxonomic identifier441771 [NCBI]
Taxonomic lineageBacteria › Firmicutes › Clostridia › Clostridiales › Clostridiaceae › Clostridium

Protein attributes

Sequence length324 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existencePredicted

Ontologies

Keywords
   DomainSignal EMBL CAL84654.1
   Molecular functionHydrolase EMBL CAL84654.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological processcarbohydrate metabolic process

Inferred from electronic annotation. Source: InterPro

   Molecular functionhydrolase activity, acting on carbon-nitrogen (but not peptide) bonds

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Signal peptide1 – 3030 Potential EMBL CAL84654.1
Chain31 – 324294 Potential EMBL CAL84654.1
PRO_5000246801

Sequences

Sequence LengthMass (Da)Tools
A5I6H2 [UniParc].

Last modified June 26, 2007. Version 1.
Checksum: 3C290916FB5767DA

FASTA32437,140
        10         20         30         40         50         60 
MNKKVISCVL ASSFLLCSCN LSTSNQKFNA SLDESNKKVE ENNIKDKSKD TGAQIKNNIN 

        70         80         90        100        110        120 
DENNTKNEKD EKKDTTTSSN INKFKDESNI SSKEKDWFFK PSKNNEPATI PEDMENDLNK 

       130        140        150        160        170        180 
YSGYFLGDTS KKHLYLTFDE GYENGYTGKI LDTLKENKVK AAFFVTAPYI KQNKDLIKRM 

       190        200        210        220        230        240 
IDEGHLVCNH SDHHPSMASA ALKGKESFKK EFTVVEDLYK DITKKDMPKF FRPPMGKYSE 

       250        260        270        280        290        300 
LSLKYTEDLG YKSIFWSFAY HDWDRNKQPS PEKGKEKILN GVHNGSIILL HAVSKTNTEI 

       310        320 
LDSVLKELKN NGYEFKTLED LPKK

« Hide

References

[1]"Genome sequence of a proteolytic (Group I) Clostridium botulinum strain Hall A and comparative analysis of the clostridial genomes."
Sebaihia M., Peck M.W., Minton N.P., Thomson N.R., Holden M.T.G., Mitchell W.J., Carter A.T., Bentley S.D., Mason D.R., Crossman L., Paul C.J., Ivens A., Wells-Bennik M.H.J., Davis I.J., Cerdeno-Tarraga A.M., Churcher C., Quail M.A., Chillingworth T. expand/collapse author list , Feltwell T., Fraser A., Goodhead I., Hance Z., Jagels K., Larke N., Maddison M., Moule S., Mungall K., Norbertczak H., Rabbinowitsch E., Sanders M., Simmonds M., White B., Whithead S., Parkhill J.
Genome Res. 17:1082-1092(2007) [PubMed: 17519437] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Hall / ATCC 3502 / NCTC 13319 / Type A [Sanger].
[2]"Analysis of the neurotoxin complex genes in Clostridium botulinum A1-A4 and B1 strains: BoNT/A3, /Ba4 and /B1 clusters are located within plasmids."
Smith T.J., Hill K.K., Foley B.T., Detter J.C., Munk A.C., Bruce D.C., Doggett N.A., Smith L.A., Marks J.D., Xie G., Brettin T.S.
PLoS ONE 2:E1271-E1271(2007) [PubMed: 18060065] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Hall / ATCC 3502 / NCTC 13319 / Type A [Los Alamos].

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000727 Genomic DNA. Translation: ABS37054.1.
AM412317 Genomic DNA. Translation: CAL84654.1.
RefSeqYP_001255583.1. NC_009495.1.
YP_001388820.1. NC_009698.1.

3D structure databases

ProteinModelPortalA5I6H2.
ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID5185027.
5401351.
GenomeReviewsGene locus CBO3091 in contig AM412317_GR.
Gene locus CLC_2993 in contig CP000727_GR.
KEGGcbh:CLC_2993.
cbo:CBO3091.
PATRIC19368261. VBICloBot22612_3070.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0726.
HOGENOMHBG751163.
OMARPPRGIF.
ProtClustDBCLSK912296.

Family and domain databases

InterProIPR011330. Glyco_hydro/deAcase_b/a-brl.
IPR002509. Polysac_deacetylase.
IPR014235. Spore_PdaA.
[Graphical view]
Gene3DG3DSA:3.20.20.370. Polysac_deacetylase. 1 hit.
PfamPF01522. Polysacc_deac_1. 1 hit.
[Graphical view]
SUPFAMSSF88713. Glyco_hydro/deAcase_b/a-brl. 1 hit.
TIGRFAMsTIGR02884. Spore_pdaA. 1 hit.
ProtoNetSearch...

Entry information

Entry nameA5I6H2_CLOBH
AccessionPrimary (citable) accession number: A5I6H2
Secondary accession number(s): A7G7Q5
Entry history
Integrated into UniProtKB/TrEMBL: June 26, 2007
Last sequence update: June 26, 2007
Last modified: December 14, 2011
This is version 29 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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