A5GWT3 (A5GWT3_SYNR3) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
RNA polymerase sigma factor RuleBase RU000715

Gene names

Name:	rpoD EMBL CAK29342.1
Ordered Locus Names:	SynRCC307_2439

Organism

Synechococcus sp. (strain RCC307) [Complete proteome] [HAMAP]

Taxonomic identifier

316278 [NCBI]

Taxonomic lineage

Bacteria › Cyanobacteria › Chroococcales › Synechococcus

Protein attributes

Sequence length	370 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released By similarity. RuleBase RU000715
Sequence similarities	Belongs to the sigma-70 factor family. RuleBase RU000715

Ontologies

Keywords
Biological process	Transcription Transcription regulation
Ligand	DNA-binding RuleBase RU000715 SAAS SAAS013325
Molecular function	Sigma factor SAAS SAAS013325 RuleBase RU000715
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	transcription initiation, DNA-dependent Inferred from electronic annotation. Source: InterPro
Molecular function	DNA binding Inferred from electronic annotation. Source: UniProtKB-KW sequence-specific DNA binding transcription factor activity Inferred from electronic annotation. Source: InterPro sigma factor activity Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	A5GWT3 [UniParc]. Last modified June 12, 2007. Version 1. Checksum: D29D076FCC336FB7	FASTA	370	42,679
	10 20 30 40 50 60 MTNRQASSKR RSTADLVRLY LQDIGRVDLL SHEEELTLAR LVQKREQLVV ERRGLCSKHP 70 80 90 100 110 120 DVARLEALEE QRLRETSKLG HQPSQSQWAQ ACGLSAGELR AQVQAGNKAW AELLDMSPGD 130 140 150 160 170 180 LQRQLLHGRR AKERMIQANL RLVVAVAKKY QHRGMELLDL VQEGTLGLER GVEKYDPTRG 190 200 210 220 230 240 FRFSTYAYWW IRQGITRAIA TQSRTIRLPV HITEKLNRIK KAQRDIASRL GRTATLKDLS 250 260 270 280 290 300 QELQLSEEVV RQTLMRVPRS VSLDTRVGRD MDTELGDLLE DGMPTPEQRL TREKLHDDLL 310 320 330 340 350 360 VLLNELSGRE ARVIRLRFGL DDDTPQTLAE IGKTLDLSRE RVRQIESRAL HKLRLPERRG 370 RVRDYMEDLD

References

[1]	Genoscope Submitted (MAY-2006) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBL GenBank DDBJ	CT978603 Genomic DNA. Translation: CAK29342.1.
RefSeq	YP_001228695.1. NC_009482.1.
3D structure databases
ProteinModelPortal	A5GWT3.
ModBase	Search...
Protein-protein interaction databases
STRING	A5GWT3.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	5158811.
GenomeReviews	Gene locus SynRCC307_2439 in contig CT978603_GR.
KEGG	syr:SynRCC307_2439.
PATRIC	23825837. VBISynSp108374_2452.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0568.
HOGENOM	HBG745096.
OMA	KVGKDKD.
ProtClustDB	CLSK826321.
Family and domain databases
InterPro	IPR014284. RNA_pol_sigma-70. IPR000943. RNA_pol_sigma70. IPR009042. RNA_pol_sigma70_r1_2. IPR007627. RNA_pol_sigma70_r2. IPR007624. RNA_pol_sigma70_r3. IPR007630. RNA_pol_sigma70_r4. IPR013325. RNA_pol_sigma_r2. IPR013324. RNA_pol_sigma_r3_r4. IPR017848. RNA_pol_sigma_RpoD_cyanobac. IPR011991. WHTH_trsnscrt_rep_DNA-bd. [Graphical view]
Gene3D	G3DSA:1.10.10.10. Wing_hlx_DNA_bd. 2 hits.
KO	K03087.
Pfam	PF00140. Sigma70_r1_2. 1 hit. PF04542. Sigma70_r2. 1 hit. PF04539. Sigma70_r3. 1 hit. PF04545. Sigma70_r4. 1 hit. [Graphical view]
PRINTS	PR00046. SIGMA70FCT.
SUPFAM	SSF88946. Sigma_r2. 1 hit. SSF88659. Sigma_r3_r4. 2 hits.
TIGRFAMs	TIGR02997. Sig70-cyanoRpoD. 1 hit. TIGR02937. Sigma70-ECF. 1 hit.
PROSITE	PS00715. SIGMA70_1. 1 hit. PS00716. SIGMA70_2. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

A5GWT3_SYNR3

Accession

Primary (citable) accession number: A5GWT3

Entry history

Integrated into UniProtKB/TrEMBL:	June 12, 2007
Last sequence update:	June 12, 2007
Last modified:	December 14, 2011
This is version 34 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)