Skip Header

Contribute Send feedback
Read comments (?) or add your own

A5GQM9 (A5GQM9_SYNR3) Unreviewed, UniProtKB/TrEMBL

Last modified January 25, 2012. Version 31. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry infoCustomize order
to top of pageNames·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein namesRecommended name:
2-dehydro-3-deoxyphosphooctonate aldolase HAMAP MF_00056
EC=2.5.1.55 HAMAP MF_00056
Alternative name(s):
3-deoxy-D-manno-octulosonic acid 8-phosphate synthase HAMAP MF_00056
KDO-8-phosphate synthase HAMAP MF_00056
Phospho-2-dehydro-3-deoxyoctonate aldolase HAMAP MF_00056
Gene names
Name:kdsA HAMAP MF_00056 EMBL CAK27188.1
Ordered Locus Names:SynRCC307_0285
OrganismSynechococcus sp. (strain RCC307) [Complete proteome] [HAMAP]
Taxonomic identifier316278 [NCBI]
Taxonomic lineageBacteria › Cyanobacteria › Chroococcales › Synechococcus

Protein attributes

Sequence length278 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

Phosphoenolpyruvate + D-arabinose 5-phosphate + H2O = 2-dehydro-3-deoxy-D-octonate 8-phosphate + phosphate. HAMAP MF_00056 SAAS SAAS006269

Pathway

Bacterial outer membrane biogenesis; lipopolysaccharide biosynthesis. HAMAP MF_00056 SAAS SAAS006269

Carbohydrate biosynthesis; 3-deoxy-D-manno-octulosonate biosynthesis; 3-deoxy-D-manno-octulosonate from D-ribulose 5-phosphate: step 2/3. HAMAP MF_00056 SAAS SAAS006269

Subcellular location

Cytoplasm By similarity HAMAP MF_00056 SAAS SAAS006269.

Sequence similarities

Belongs to the KdsA family. HAMAP MF_00056

Sequences

Sequence LengthMass (Da)Tools
A5GQM9 [UniParc].

Last modified June 12, 2007. Version 1.
Checksum: 0E08CAE98934CBE7

FASTA27829,680
        10         20         30         40         50         60 
MSIPFTLIAG PCVLESPELV FDMAAALKAM SERLGIRLLF KTSFDKANRS SGGSFRGPGM 

        70         80         90        100        110        120 
EQGLEVLAQL KQELGVQLLT DIHESHQAAV VAQVVDVLQI PAFLCRQTDL LLAAAAAVQN 

       130        140        150        160        170        180 
PEAAASVVNV KKGQFLAPWD MAQVVSKLRE AGLQSPEQLW LTERGTTFGY NTLVVDMRSL 

       190        200        210        220        230        240 
PQLRQQGCPV IFDATHSVQQ PGGRGSSTGG QREFVAPLAR AAMAVGVDGL FIETHPDPDQ 

       250        260        270 
ALSDGPNMVP LHRLEPLLEQ LLAIRAAAAA QPEAVSSL

« Hide

References

[1]Genoscope
Submitted (MAY-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CT978603 Genomic DNA. Translation: CAK27188.1.
RefSeqYP_001226541.1. NC_009482.1.

3D structure databases

ProteinModelPortalA5GQM9.
SMRA5GQM9. Positions 4-273.
ModBaseSearch...

Protein-protein interaction databases

STRINGA5GQM9.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID5157254.
GenomeReviewsGene locus SynRCC307_0285 in contig CT978603_GR.
KEGGsyr:SynRCC307_0285.
PATRIC23821400. VBISynSp108374_0274.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG2877.
HOGENOMHBG575990.
OMADVHEAAQ.
PhylomeDBA5GQM9.
ProtClustDBPRK05198.

Family and domain databases

HAMAPMF_00056. KDO8P_synth.
[Tree]
InterProIPR013785. Aldolase_TIM.
IPR006218. DAHP1/KDSA.
IPR006269. KDO8P_synthase.
[Graphical view]
Gene3DG3DSA:3.20.20.70. Aldolase_TIM. 1 hit.
KOK01627.
PANTHERPTHR21057:SF2. KDO8P_synthase. 1 hit.
PfamPF00793. DAHP_synth_1. 1 hit.
[Graphical view]
TIGRFAMsTIGR01362. KDO8P_synth. 1 hit.
ProtoNetSearch...

Entry information

Entry nameA5GQM9_SYNR3
AccessionPrimary (citable) accession number: A5GQM9
Entry history
Integrated into UniProtKB/TrEMBL: June 12, 2007
Last sequence update: June 12, 2007
Last modified: January 25, 2012
This is version 31 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry info