A5GPM0 (A5GPM0_SYNPW) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
RNA polymerase sigma factor RuleBase RU000715

Gene names

Ordered Locus Names:

SynWH7803_2459

Organism

Synechococcus sp. (strain WH7803) [Complete proteome] [HAMAP]

Taxonomic identifier

32051 [NCBI]

Taxonomic lineage

Bacteria › Cyanobacteria › Chroococcales › Synechococcus

Protein attributes

Sequence length	376 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released By similarity. RuleBase RU000715
Sequence similarities	Belongs to the sigma-70 factor family. RuleBase RU000715

Ontologies

Keywords
Biological process	Transcription Transcription regulation
Ligand	DNA-binding SAAS SAAS013325 RuleBase RU000715
Molecular function	Sigma factor RuleBase RU000715 SAAS SAAS013325
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	transcription initiation, DNA-dependent Inferred from electronic annotation. Source: InterPro
Molecular function	DNA binding Inferred from electronic annotation. Source: UniProtKB-KW sequence-specific DNA binding transcription factor activity Inferred from electronic annotation. Source: InterPro sigma factor activity Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	A5GPM0 [UniParc]. Last modified June 12, 2007. Version 1. Checksum: 6AF33A7E61734E26	FASTA	376	43,456
	10 20 30 40 50 60 MSEKARTTGK APIRWSGGND LLRLYLQDIG RVDLLTSEEE VTLSRQVQQR ERLLVQERDL 70 80 90 100 110 120 STRIAAIRVL LDLEELQQRE ANHISHWPTR QEWARAAEMP LVELNRVLNE GYTLWAEESG 130 140 150 160 170 180 LEAKELQRRL REGRRARDRM IQANLRLVVA VAKKYQQRGM ELLDLVQEGT LGLERAVEKF 190 200 210 220 230 240 DPTRGFRFST YAYWWIRQGI TRAIATQSRT IRLPVHITEK LNRIKRVQQE IASEQGRLAS 250 260 270 280 290 300 VSDLAKELGV SEDTVRQTLA RVPRSVSLET RVGKDQDTQL GDLLEDGHAT PEQTLTRDAL 310 320 330 340 350 360 HDDLEHLLDE LNPREAEVIR SRFGLEDDTP RTLAEIGEAM ALSRERVRQI ETRALLKLRQ 370 PQRRSKVRDY IQGLDS

References

[1]	Genoscope Submitted (MAY-2006) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBL GenBank DDBJ	CT971583 Genomic DNA. Translation: CAK24885.1.
RefSeq	YP_001226182.1. NC_009481.1.
3D structure databases
ProteinModelPortal	A5GPM0.
SMR	A5GPM0. Positions 117-207.
ModBase	Search...
Protein-protein interaction databases
STRING	A5GPM0.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	5147603.
GenomeReviews	Gene locus SynWH7803_2459 in contig CT971583_GR.
KEGG	syx:SynWH7803_2459.
PATRIC	23831212. VBISynSp43824_2542.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0568.
HOGENOM	HBG745096.
OMA	KVGKDKD.
PhylomeDB	A5GPM0.
ProtClustDB	CLSK826321.
Enzyme and pathway databases
BioCyc	SSP32051:SYNWH7803_2459-MONOMER.
Family and domain databases
InterPro	IPR014284. RNA_pol_sigma-70. IPR000943. RNA_pol_sigma70. IPR009042. RNA_pol_sigma70_r1_2. IPR007627. RNA_pol_sigma70_r2. IPR007624. RNA_pol_sigma70_r3. IPR007630. RNA_pol_sigma70_r4. IPR013325. RNA_pol_sigma_r2. IPR013324. RNA_pol_sigma_r3_r4. IPR017848. RNA_pol_sigma_RpoD_cyanobac. IPR011991. WHTH_trsnscrt_rep_DNA-bd. [Graphical view]
Gene3D	G3DSA:1.10.10.10. Wing_hlx_DNA_bd. 2 hits.
KO	K03087.
Pfam	PF00140. Sigma70_r1_2. 1 hit. PF04542. Sigma70_r2. 1 hit. PF04539. Sigma70_r3. 1 hit. PF04545. Sigma70_r4. 1 hit. [Graphical view]
PRINTS	PR00046. SIGMA70FCT.
SUPFAM	SSF88946. Sigma_r2. 1 hit. SSF88659. Sigma_r3_r4. 2 hits.
TIGRFAMs	TIGR02997. Sig70-cyanoRpoD. 1 hit. TIGR02937. Sigma70-ECF. 1 hit.
PROSITE	PS00715. SIGMA70_1. 1 hit. PS00716. SIGMA70_2. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

A5GPM0_SYNPW

Accession

Primary (citable) accession number: A5GPM0

Entry history

Integrated into UniProtKB/TrEMBL:	June 12, 2007
Last sequence update:	June 12, 2007
Last modified:	December 14, 2011
This is version 32 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)