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A5GMW1

- UCRI_SYNPW

UniProt

A5GMW1 - UCRI_SYNPW

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Protein

Cytochrome b6-f complex iron-sulfur subunit

Gene

petC

Organism
Synechococcus sp. (strain WH7803)
Status
Reviewed - Annotation score: 3 out of 5- Protein inferred from homologyi

Functioni

Component of the cytochrome b6-f complex, which mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions.UniRule annotation

Catalytic activityi

Plastoquinol + 2 oxidized plastocyanin + 2 H+(Side 1) = plastoquinone + 2 reduced plastocyanin + 4 H+(Side 2).UniRule annotation

Cofactori

Binds 1 2Fe-2S cluster per subunit.UniRule annotation

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi107 – 1071Iron-sulfur (2Fe-2S)UniRule annotation
Metal bindingi109 – 1091Iron-sulfur (2Fe-2S); via pros nitrogenUniRule annotation
Metal bindingi125 – 1251Iron-sulfur (2Fe-2S)UniRule annotation
Metal bindingi128 – 1281Iron-sulfur (2Fe-2S); via pros nitrogenUniRule annotation

GO - Molecular functioni

  1. 2 iron, 2 sulfur cluster binding Source: UniProtKB-KW
  2. electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity Source: UniProtKB-HAMAP
  3. metal ion binding Source: UniProtKB-KW
  4. plastoquinol--plastocyanin reductase activity Source: UniProtKB-HAMAP
  5. ubiquinol-cytochrome-c reductase activity Source: InterPro

GO - Biological processi

  1. photosynthesis Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Oxidoreductase

Keywords - Biological processi

Electron transport, Transport

Keywords - Ligandi

2Fe-2S, Iron, Iron-sulfur, Metal-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Cytochrome b6-f complex iron-sulfur subunitUniRule annotation (EC:1.10.9.1UniRule annotation)
Alternative name(s):
Plastohydroquinone:plastocyanin oxidoreductase iron-sulfur proteinUniRule annotation
Short name:
ISPUniRule annotation
Short name:
RISPUniRule annotation
Rieske iron-sulfur proteinUniRule annotation
Gene namesi
Name:petCUniRule annotation
Ordered Locus Names:SynWH7803_1850
OrganismiSynechococcus sp. (strain WH7803)
Taxonomic identifieri32051 [NCBI]
Taxonomic lineageiBacteriaCyanobacteriaOscillatoriophycideaeChroococcalesSynechococcus
ProteomesiUP000001566: Chromosome

Subcellular locationi

Cellular thylakoid membrane UniRule annotation; Single-pass membrane protein UniRule annotation
Note: The transmembrane helix obliquely spans the membrane in one monomer, and its extrinsic C-terminal domain is part of the other monomer.UniRule annotation

GO - Cellular componenti

  1. integral component of membrane Source: UniProtKB-KW
  2. thylakoid membrane Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Cellular componenti

Membrane, Thylakoid

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 178178Cytochrome b6-f complex iron-sulfur subunitPRO_0000298468Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Disulfide bondi112 ↔ 127UniRule annotation

Keywords - PTMi

Disulfide bond

Interactioni

Subunit structurei

The 4 large subunits of the cytochrome b6-f complex are cytochrome b6, subunit IV (17 kDa polypeptide, PetD), cytochrome f and the Rieske protein, while the 4 small subunits are PetG, PetL, PetM and PetN. The complex functions as a dimer.UniRule annotation

Protein-protein interaction databases

STRINGi32051.SynWH7803_1850.

Structurei

3D structure databases

ProteinModelPortaliA5GMW1.
SMRiA5GMW1. Positions 8-177.
ModBaseiSearch...
MobiDBiSearch...

Transmembrane

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei20 – 4223HelicalUniRule annotationAdd
BLAST

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini71 – 16191RieskeUniRule annotationAdd
BLAST

Sequence similaritiesi

Contains 1 Rieske domain.UniRule annotation

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiCOG0723.
HOGENOMiHOG000255192.
KOiK02636.
OMAiPWTETDF.
OrthoDBiEOG6S52N7.

Family and domain databases

Gene3Di2.102.10.10. 1 hit.
HAMAPiMF_01335. Cytb6_f_Rieske.
InterProiIPR014909. Cyt_b6-f_cplx_Fe-S_su.
IPR023960. Cyt_b6_f_Rieske.
IPR017941. Rieske_2Fe-2S.
IPR014349. Rieske_Fe-S_prot.
IPR005805. Rieske_Fe-S_prot_C.
[Graphical view]
PANTHERiPTHR10134. PTHR10134. 1 hit.
PfamiPF08802. CytB6-F_Fe-S. 1 hit.
PF00355. Rieske. 1 hit.
[Graphical view]
PRINTSiPR00162. RIESKE.
SUPFAMiSSF50022. SSF50022. 1 hit.
PROSITEiPS51296. RIESKE. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A5GMW1-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MTQMPAGDVP GMGRRQFMNL LTFGSVTGVA LGALYPVVNY FIPPRAAGSG
60 70 80 90 100
GGTSAKDELG NAVTASGWLS THPAGDRSLV QGLKGDPTYL IVEGDDAIGS
110 120 130 140 150
YGINAICTHL GCVVPWNSGA NKFMCPCHGS QYDATGKVVR GPAPLSLALA
160 170
NVSVENDNVF VSQWTDTDFR TGEKPWWA
Length:178
Mass (Da):18,665
Last modified:June 12, 2007 - v1
Checksum:iA5FE69845EACB557
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CT971583 Genomic DNA. Translation: CAK24276.1.
RefSeqiWP_011933748.1. NC_009481.1.
YP_001225573.1. NC_009481.1.

Genome annotation databases

EnsemblBacteriaiCAK24276; CAK24276; SynWH7803_1850.
GeneIDi5147149.
KEGGisyx:SynWH7803_1850.
PATRICi23829895. VBISynSp43824_1896.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CT971583 Genomic DNA. Translation: CAK24276.1 .
RefSeqi WP_011933748.1. NC_009481.1.
YP_001225573.1. NC_009481.1.

3D structure databases

ProteinModelPortali A5GMW1.
SMRi A5GMW1. Positions 8-177.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 32051.SynWH7803_1850.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai CAK24276 ; CAK24276 ; SynWH7803_1850 .
GeneIDi 5147149.
KEGGi syx:SynWH7803_1850.
PATRICi 23829895. VBISynSp43824_1896.

Phylogenomic databases

eggNOGi COG0723.
HOGENOMi HOG000255192.
KOi K02636.
OMAi PWTETDF.
OrthoDBi EOG6S52N7.

Family and domain databases

Gene3Di 2.102.10.10. 1 hit.
HAMAPi MF_01335. Cytb6_f_Rieske.
InterProi IPR014909. Cyt_b6-f_cplx_Fe-S_su.
IPR023960. Cyt_b6_f_Rieske.
IPR017941. Rieske_2Fe-2S.
IPR014349. Rieske_Fe-S_prot.
IPR005805. Rieske_Fe-S_prot_C.
[Graphical view ]
PANTHERi PTHR10134. PTHR10134. 1 hit.
Pfami PF08802. CytB6-F_Fe-S. 1 hit.
PF00355. Rieske. 1 hit.
[Graphical view ]
PRINTSi PR00162. RIESKE.
SUPFAMi SSF50022. SSF50022. 1 hit.
PROSITEi PS51296. RIESKE. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Genoscope
    Submitted (MAY-2006) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: WH7803.

Entry informationi

Entry nameiUCRI_SYNPW
AccessioniPrimary (citable) accession number: A5GMW1
Entry historyi
Integrated into UniProtKB/Swiss-Prot: August 21, 2007
Last sequence update: June 12, 2007
Last modified: October 29, 2014
This is version 61 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Miscellaneous

The Rieske iron-sulfur protein is a high potential 2Fe-2S protein.

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3