Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

Protein RTF2 homolog

Gene

RTFDC1

Organism
Sus scrofa (Pig)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Names & Taxonomyi

Protein namesi
Recommended name:
Protein RTF2 homolog
Alternative name(s):
Replication termination factor 2 domain-containing protein 1
Gene namesi
Name:RTFDC1
OrganismiSus scrofa (Pig)
Taxonomic identifieri9823 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaLaurasiatheriaCetartiodactylaSuinaSuidaeSus
Proteomesi
  • UP000008227 Componenti: Chromosome 17

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 306306Protein RTF2 homologPRO_0000327237Add
BLAST

Proteomic databases

PaxDbiA5GFW7.

Expressioni

Gene expression databases

GenevisibleiA5GFW7. SS.

Interactioni

Protein-protein interaction databases

STRINGi9823.ENSSSCP00000030380.

Family & Domainsi

Sequence similaritiesi

Belongs to the rtf2 family.Curated

Phylogenomic databases

eggNOGiKOG3113. Eukaryota.
ENOG41113CN. LUCA.
GeneTreeiENSGT00390000010923.
HOGENOMiHOG000230885.
HOVERGENiHBG051164.
InParanoidiA5GFW7.
OMAiEFRWLHC.
OrthoDBiEOG7BW0KH.
TreeFamiTF314621.

Family and domain databases

InterProiIPR006735. DUF602.
IPR027799. Rtf2_RING-finger.
[Graphical view]
PANTHERiPTHR12775. PTHR12775. 1 hit.
PfamiPF04641. Rtf2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A5GFW7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGCDGGTIPK RHELVKGPKK VEKVDKDAEL VAQWNYCTLS QEILRRPIVA
60 70 80 90 100
CELGRLYNKD AVIEFLLDKS SEKALGKAAS HIKSIKNVTE LRLSDNPAWE
110 120 130 140 150
GDKGSTKGDK HDDLQRARFI CPVVGLEMNG RHRFCYLRCC GCVFSERALK
160 170 180 190 200
EIKAEVCHTC GAAFQEDDVI VLNGTKEDVA MLQTRMEERR LRAKLGKKTK
210 220 230 240 250
KPKAAESVSK SDISEEAPGP SKMKAGKPEE TSLDSREKKT SSAPRSAAAH
260 270 280 290 300
GSSSGKAGKP VCGAPKRSIA DSGESEAYKS LFTTHSSAKR SKEESAHWVT

HTSYCF
Length:306
Mass (Da):33,601
Last modified:June 12, 2007 - v1
Checksum:i4F3D6901733991C7
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti247 – 2471Missing in CAN13140 (Ref. 1) Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CR956640 Genomic DNA. Translation: CAN13140.1.
CR956640 Genomic DNA. Translation: CAN13141.1.
RefSeqiNP_001103902.1. NM_001110432.1.
XP_005673089.1. XM_005673032.2.
UniGeneiSsc.15421.

Genome annotation databases

EnsembliENSSSCT00000033915; ENSSSCP00000030380; ENSSSCG00000007496.
GeneIDi100126294.
KEGGissc:100126294.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CR956640 Genomic DNA. Translation: CAN13140.1.
CR956640 Genomic DNA. Translation: CAN13141.1.
RefSeqiNP_001103902.1. NM_001110432.1.
XP_005673089.1. XM_005673032.2.
UniGeneiSsc.15421.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi9823.ENSSSCP00000030380.

Proteomic databases

PaxDbiA5GFW7.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSSSCT00000033915; ENSSSCP00000030380; ENSSSCG00000007496.
GeneIDi100126294.
KEGGissc:100126294.

Organism-specific databases

CTDi51507.

Phylogenomic databases

eggNOGiKOG3113. Eukaryota.
ENOG41113CN. LUCA.
GeneTreeiENSGT00390000010923.
HOGENOMiHOG000230885.
HOVERGENiHBG051164.
InParanoidiA5GFW7.
OMAiEFRWLHC.
OrthoDBiEOG7BW0KH.
TreeFamiTF314621.

Gene expression databases

GenevisibleiA5GFW7. SS.

Family and domain databases

InterProiIPR006735. DUF602.
IPR027799. Rtf2_RING-finger.
[Graphical view]
PANTHERiPTHR12775. PTHR12775. 1 hit.
PfamiPF04641. Rtf2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Porcine genome sequencing project
    Submitted (MAY-2007) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Entry informationi

Entry nameiRTF2_PIG
AccessioniPrimary (citable) accession number: A5GFW7
Secondary accession number(s): A5GFW6
Entry historyi
Integrated into UniProtKB/Swiss-Prot: April 8, 2008
Last sequence update: June 12, 2007
Last modified: November 11, 2015
This is version 42 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.