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Protein
Submitted name:

ATP dependent DNA ligase

Gene

Gura_3452

Organism
Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciGURA351605:GI6A-3502-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:Gura_3452Imported
OrganismiGeobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens)Imported
Taxonomic identifieri351605 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaDeltaproteobacteriaDesulfuromonadalesGeobacteraceaeGeobacter
ProteomesiUP000006695 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi351605.Gura_3452.

Structurei

3D structure databases

ProteinModelPortaliA5G740.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000222509.
KOiK01971.
OMAiKWSDREV.
OrthoDBiEOG661H49.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR014146. LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEiPS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A5G740-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGLKEYASKR RFEKTPEPKP DVPHEGRRLV FVVHKHAARA LHYDLRLELE
60 70 80 90 100
GVLKSWAVPK GPSLDPSVKR LAVMVEDHPL DYRDFEGVIP EGNYGAGSVI
110 120 130 140 150
IWDRGFYRHP SAGDENENEK LLLDGLRKGD MKFVLEGEKL RGEFALVRMG
160 170 180 190 200
KDGKSWLLLK KKDRYASKGE ILQENRSVVS HKTLEEMLEA GGQKSFKQKK
210 220 230 240 250
INQIRLHEAK ESEELHDAPV KPMPHNIKPM LATLAREPFD HPDWVFEVKW
260 270 280 290 300
DGYRAIAEMR DGDVALYSRN LLSLQQKFSP IADALRECRF DAVLDGEIVV
310 320 330 340 350
VDDRGHPDFQ LLQNYQKSGN GHLLYYVFDL LYFQGHDLTG LPLLRRKEIL
360 370 380 390 400
KKILPSAPKI KYSDHVWKDG VLFFTVVREK GLEGIIAKHA QSAYQMGIRS
410 420 430 440 450
RQWLKVKTRL TQEGVIAGFT EPRGGRKCFG TLVLGVFQGD ELIYIGHSGG
460 470 480 490 500
GFGAKDLQEI RAKLEPLIRK ECPFKVRPET NTPATWVKPE LVCEISLSGW
510 520 530
TEDAVMRHPV FLRLREDKTA REVVRDSGGE GGNL
Length:534
Mass (Da):60,785
Last modified:June 12, 2007 - v1
Checksum:i9AAD38E13BD27388
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000698 Genomic DNA. Translation: ABQ27608.1.
RefSeqiWP_011940269.1. NC_009483.1.
YP_001232181.1. NC_009483.1.

Genome annotation databases

EnsemblBacteriaiABQ27608; ABQ27608; Gura_3452.
KEGGigur:Gura_3452.
PATRICi22037278. VBIGeoUra13052_3689.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000698 Genomic DNA. Translation: ABQ27608.1.
RefSeqiWP_011940269.1. NC_009483.1.
YP_001232181.1. NC_009483.1.

3D structure databases

ProteinModelPortaliA5G740.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi351605.Gura_3452.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABQ27608; ABQ27608; Gura_3452.
KEGGigur:Gura_3452.
PATRICi22037278. VBIGeoUra13052_3689.

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000222509.
KOiK01971.
OMAiKWSDREV.
OrthoDBiEOG661H49.

Enzyme and pathway databases

BioCyciGURA351605:GI6A-3502-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR014146. LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEiPS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Rf4Imported.

Entry informationi

Entry nameiA5G740_GEOUR
AccessioniPrimary (citable) accession number: A5G740
Entry historyi
Integrated into UniProtKB/TrEMBL: June 12, 2007
Last sequence update: June 12, 2007
Last modified: April 29, 2015
This is version 48 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.