A5FYY5 (A5FYY5_ACICJ) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
ATP dependent DNA ligase EMBL ABQ30817.1

Gene names

Ordered Locus Names:

Acry_1611 EMBL ABQ30817.1

Organism

Acidiphilium cryptum (strain JF-5) [Complete proteome] [HAMAP] EMBL ABQ30817.1

Taxonomic identifier

349163 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Alphaproteobacteria › Rhodospirillales › Acetobacteraceae › Acidiphilium › Acidiphilium cryptum

Protein attributes

Sequence length	522 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL ABQ30817.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA ligation involved in DNA repair Inferred from electronic annotation. Source: InterPro DNA recombination Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	A5FYY5 [UniParc]. Last modified June 12, 2007. Version 1. Checksum: 4787A198BB118ADE	FASTA	522	57,219
	10 20 30 40 50 60 MKPFADLLER LLYTTGRNAK IALLADYFAH RPDPERGYAL AAIAGALDFP GAKPAVLREL 70 80 90 100 110 120 AAARTDPELF ALSYDFVGDL AETIALLWPP AARPAPPGLP DLVAALRAAP RAEIPALIEG 130 140 150 160 170 180 WLDASDVSTR IALIKLITGG LRVGASLRLA KLALARQFAV EADEIEEVWH GLEAPYTALF 190 200 210 220 230 240 DWLEGRAPRP APGAAPVFRP PMLAHPIEAA DLATLDWSAH RAEWKWDGIR VQLVSTPGGS 250 260 270 280 290 300 RLYSRGAEDI SAAFPEIVAA MDFHAVLDGE LLVIRDGAVA PFADLQQRLN RKSVPAKLRA 310 320 330 340 350 360 ANPVGVRLYD MLFEGETDLR GLPFDARRAR LEAWFARTAP ARMDLSELIP FAAAEDLAAL 370 380 390 400 410 420 RAGARDAAIE GLMLKRADSP YLAGRPKGHW WKWKRDPLSL DCVLMYAQRG HGKRSSYYSD 430 440 450 460 470 480 YTFGVWTAEG ALVPVGKAYS GYTDAELQRL DRWIRAHTVA SYGPVREVEK AIVLEVGFDA 490 500 510 520 AQRSTRHKSG IALRFPRILR IREDKPAAEA DTLETARLLL PG

References

[1]

"Complete sequence of chromosome of Acidiphilium cryptum JF-5." US DOE Joint Genome Institute Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Sims D., Brettin T., Bruce D., Han C., Schmutz J., Larimer F., Land M. , Hauser L., Kyrpides N., Kim E., Magnuson T., Richardson P. Submitted (MAY-2007) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: JF-5 EMBL ABQ30817.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000697 Genomic DNA. Translation: ABQ30817.1.
RefSeq	YP_001234736.1. NC_009484.1.
3D structure databases
ProteinModelPortal	A5FYY5.
ModBase	Search...
Protein-protein interaction databases
STRING	349163.Acry_1611.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ABQ30817; ABQ30817; Acry_1611.
GeneID	5161964.
KEGG	acr:Acry_1611.
PATRIC	20648252. VBIAciCry6074_2110.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG1793.
HOGENOM	HOG000036007.
KO	K01971.
OMA	AYDLLEW.
Enzyme and pathway databases
BioCyc	ACRY349163:GHET-1665-MONOMER.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR026333. ATP_dep_DNA_lig_pp_1105_fam. IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR016059. DNA_ligase_ATP-dep_CS. IPR012340. NA-bd_OB-fold. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMs	TIGR04120. DNA_lig_bact. 1 hit.
PROSITE	PS00697. DNA_LIGASE_A1. 1 hit. PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

A5FYY5_ACICJ

Accession

Primary (citable) accession number: A5FYY5

Entry history

Integrated into UniProtKB/TrEMBL:	June 12, 2007
Last sequence update:	June 12, 2007
Last modified:	May 1, 2013
This is version 42 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)