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A5FY60 (A5FY60_ACICJ) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 45. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Exodeoxyribonuclease 7 large subunit HAMAP-Rule MF_00378
EC=3.1.11.6 HAMAP-Rule MF_00378
Alternative name(s):
Exodeoxyribonuclease VII large subunit HAMAP-Rule MF_00378
Gene names
Name:xseA HAMAP-Rule MF_00378
Ordered Locus Names:Acry_1331 EMBL ABQ30542.1
OrganismAcidiphilium cryptum (strain JF-5) [Complete proteome] [HAMAP] EMBL ABQ30542.1
Taxonomic identifier349163 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Alphaproteobacteria › Rhodospirillales › Acetobacteraceae › Acidiphilium ›

Protein attributes

Sequence length462 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides By similarity. HAMAP-Rule MF_00378 SAAS SAAS025824

Catalytic activity

Exonucleolytic cleavage in either 5'- to 3'- or 3'- to 5'-direction to yield nucleoside 5'-phosphates. HAMAP-Rule MF_00378

Exonucleolytic cleavage in either 5'- to 3'-or 3'- to 5'-direction to yield nucleoside 5'-phosphates. SAAS SAAS025824

Subunit structure

Heterooligomer composed of large and small subunits By similarity. HAMAP-Rule MF_00378 SAAS SAAS025824

Subcellular location

Cytoplasm By similarity HAMAP-Rule MF_00378 SAAS SAAS025824.

Sequence similarities

Belongs to the XseA family. HAMAP-Rule MF_00378

Sequences

Sequence LengthMass (Da)Tools
A5FY60 [UniParc].

Last modified June 12, 2007. Version 1.
Checksum: A92329C97C5030ED

FASTA46249,535
        10         20         30         40         50         60 
MSETTDTATG NLPELTVSEL AGAVKRTVET AFGRVRVRGE ITEMKTYASG HTYMALKDEG 

        70         80         90        100        110        120 
AKIRAIIWRG NAARLGLKPE NGVEVIATGR ITTYPERSEY QLIIERLDYA GEGALLARIE 

       130        140        150        160        170        180 
KLRLRLTEEG LFDAARKRAL PLLPRIVGVV SSPQGAVIQD IRTTIARRFP RRIILWPVAV 

       190        200        210        220        230        240 
QGEAAAAQIA AAIRGFGALP EAGEVPRPDV LIVARGGGSL EDLMAFNDEE VVRAAASCPI 

       250        260        270        280        290        300 
PLISAVGHET DTTLIDFASD RRAPTPTAAA ELAVPDRMAL AADLAQSGAR LTGALTRVTQ 

       310        320        330        340        350        360 
SVRLRLDRAA AALPDLPSMI GTARQRLDDR GERLALALPR LVAAKRAQAR EVAARLVHPR 

       370        380        390        400        410        420 
EIIAARRHSL ALLGQRLAAP APGLLRENRL RLGALAARLE ALSYHATLAR GFVMVATPSG 

       430        440        450        460 
DPVTTRRDAG SKRHLVLHFG DGTLGVRPEA DRAPPAQTSL DL

« Hide

References

[1]"Complete sequence of chromosome of Acidiphilium cryptum JF-5."
US DOE Joint Genome Institute
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Sims D., Brettin T., Bruce D., Han C., Schmutz J., Larimer F., Land M. expand/collapse author list , Hauser L., Kyrpides N., Kim E., Magnuson T., Richardson P.
Submitted (MAY-2007) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: JF-5 EMBL ABQ30542.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000697 Genomic DNA. Translation: ABQ30542.1.
RefSeqYP_001234461.1. NC_009484.1.

3D structure databases

ModBaseSearch...

Protein-protein interaction databases

STRING349163.Acry_1331.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABQ30542; ABQ30542; Acry_1331.
GeneID5159924.
KEGGacr:Acry_1331.
PATRIC20647676. VBIAciCry6074_1826.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG1570.
HOGENOMHOG000229266.
KOK03601.
OMAAPRIWEV.
ProtClustDBCLSK936469.

Enzyme and pathway databases

BioCycACRY349163:GHET-1385-MONOMER.

Family and domain databases

HAMAPMF_00378. Exonuc_7_L.
InterProIPR003753. Exonuc_VII_L.
IPR020579. Exonuc_VII_lsu_C.
IPR025824. OB-fold_nuc-bd_dom.
[Graphical view]
PfamPF02601. Exonuc_VII_L. 1 hit.
PF13742. tRNA_anti_2. 1 hit.
[Graphical view]
TIGRFAMsTIGR00237. xseA. 1 hit.
ProtoNetSearch...

Entry information

Entry nameA5FY60_ACICJ
AccessionPrimary (citable) accession number: A5FY60
Entry history
Integrated into UniProtKB/TrEMBL: June 12, 2007
Last sequence update: June 12, 2007
Last modified: May 1, 2013
This is version 45 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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