A5FUH6 (A5FUH6_ACICJ) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
DNA topoisomerase IV subunit B EMBL ABQ29258.1
EC=5.99.1.3 EMBL ABQ29258.1

Gene names

Ordered Locus Names:

Acry_0029

Organism

Acidiphilium cryptum (strain JF-5) [Complete proteome] [HAMAP]

Taxonomic identifier

349163 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Alphaproteobacteria › Rhodospirillales › Acetobacteraceae › Acidiphilium

Protein attributes

Sequence length	653 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the type II topoisomerase family. RuleBase RU000380

Ontologies

Keywords
Ligand	ATP-binding RuleBase RU000380 SAAS SAAS002288 Nucleotide-binding
Molecular function	Isomerase Topoisomerase RuleBase RU000380 SAAS SAAS002288
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	DNA topological change Inferred from electronic annotation. Source: InterPro
Cellular component	chromosome Inferred from electronic annotation. Source: InterPro
Molecular function	ATP binding Inferred from electronic annotation. Source: UniProtKB-KW DNA topoisomerase (ATP-hydrolyzing) activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	A5FUH6 [UniParc]. Last modified June 12, 2007. Version 1. Checksum: E6A65A5B8E38D4F8	FASTA	653	71,479
	10 20 30 40 50 60 MTDLFEQAAG QASYSAKDIE VLEGLEPVRR RPGMYIGGTD DAAMHHLAAE LLDNAMDEAV 70 80 90 100 110 120 AGHASIIEMT LAPGNLLTVR DNGRGIPVDP HPKFRDKSAL EVILTTLHSG GKFAGKAYAT 130 140 150 160 170 180 SGGLHGVGSS VVNALAERLE VEVAREKTLW KQDYARGKPL TKLVNAGATP NRRGTLIRFV 190 200 210 220 230 240 PDPEIFGDKK FSPARLYRMC RSKAYLFRGV RIRWTCDAAL IAAGADVPAQ AELHFPGGLA 250 260 270 280 290 300 DSLAEELGAA PKLVAPVWAG QADLPDDAGR IEWACAWLEA GEATLSTYCN TIPTTLGGTH 310 320 330 340 350 360 EAGFRAALLK GLRGFGEQRS NKRAAVITAE DATGALAAKL SLFIRDPQFQ GQTKEKLTSP 370 380 390 400 410 420 EAQKLTEAAL RDRFEHFLTG DPANADNLLA FVIERAEERI RRREQKDTPR KSATRRLRLP 430 440 450 460 470 480 GKLTDCSRES REDTEIFLVE GDSAGGSAKQ ARNRETQAVL PLRGKILNVA SASTEKLRQN 490 500 510 520 530 540 QELKDLIEAL GCGVGDRFQI DALRYGRIII MTDADVDGAH IASLLMTFFY RELPELIRGG 550 560 570 580 590 600 HVYLAQPPLY RLTQGGKSVY AMDDGERDRL VKTAFKANAK VEISRFKGLG EMPPAILKET 610 620 630 640 650 TMDPKRRVLL RVLAPPEARA ETAEIVESLM GRKPELRFRF IQDHASSVQE LDV

References

[1]

"Complete sequence of chromosome of Acidiphilium cryptum JF-5." Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Sims D., Brettin T., Bruce D., Han C., Schmutz J., Larimer F., Land M. , Hauser L., Kyrpides N., Kim E., Magnuson T., Richardson P. Submitted (MAY-2007) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: JF-5.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000697 Genomic DNA. Translation: ABQ29258.1.
RefSeq	YP_001233177.1. NC_009484.1.
3D structure databases
ProteinModelPortal	A5FUH6.
ModBase	Search...
Protein-protein interaction databases
STRING	A5FUH6.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	5159445.
GenomeReviews	Gene locus Acry_0029 in contig CP000697_GR.
KEGG	acr:Acry_0029.
PATRIC	20644994. VBIAciCry6074_0506.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0187.
HOGENOM	HBG304889.
OMA	QARDKEF.
ProtClustDB	PRK05559.
Family and domain databases
InterPro	IPR003594. ATPase-like_ATP-bd. IPR020568. Ribosomal_S5_D2-typ_fold. IPR014721. Ribosomal_S5_D2-typ_fold_subgr. IPR001241. Topo_IIA. IPR013759. Topo_IIA_B/N_ab. IPR002288. Topo_IIA_B_C. IPR013506. Topo_IIA_bsu_dom2. IPR013760. Topo_IIA_cen. IPR018522. TopoIIA_CS. IPR005737. TopoIV_B_Gneg. [Graphical view]
Gene3D	G3DSA:3.30.565.10. ATP_bd_ATPase. 1 hit. G3DSA:3.30.230.10. Ribosomal_S5_D2-type_fold. 1 hit. G3DSA:3.40.50.670. Topo_IIA_B/N_ab. 1 hit.
KO	K02622.
Pfam	PF00204. DNA_gyraseB. 1 hit. PF00986. DNA_gyraseB_C. 1 hit. PF02518. HATPase_c. 1 hit. [Graphical view]
PRINTS	PR00418. TPI2FAMILY.
SMART	SM00387. HATPase_c. 1 hit. SM00433. TOP2c. 1 hit. [Graphical view]
SUPFAM	SSF55874. ATP_bd_ATPase. 1 hit. SSF54211. Ribosomal_S5_D2-typ_fold. 1 hit. SSF56719. Topo_IIA_cen. 1 hit.
TIGRFAMs	TIGR01055. ParE_Gneg. 1 hit.
PROSITE	PS00177. TOPOISOMERASE_II. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

A5FUH6_ACICJ

Accession

Primary (citable) accession number: A5FUH6

Entry history

Integrated into UniProtKB/TrEMBL:	June 12, 2007
Last sequence update:	June 12, 2007
Last modified:	January 25, 2012
This is version 34 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)