A5FR12 (A5FR12_DEHSB) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
tRNA synthetase, class II (D, K and N) EMBL ABQ17370.1

Gene names

Ordered Locus Names:

DehaBAV1_0787

Organism

Dehalococcoides sp. (strain BAV1) [Complete proteome] [HAMAP]

Taxonomic identifier

216389 [NCBI]

Taxonomic lineage

Bacteria › Chloroflexi › Dehalococcoidetes › Dehalococcoides

Protein attributes

Sequence length	309 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the class-II aminoacyl-tRNA synthetase family. RuleBase RU003746

Ontologies

Keywords
Biological process	Protein biosynthesis RuleBase RU003747
Ligand	ATP-binding RuleBase RU003747 Nucleotide-binding
Molecular function	Aminoacyl-tRNA synthetase RuleBase RU003747 EMBL ABQ17370.1 Ligase
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	lysyl-tRNA aminoacylation Inferred from electronic annotation. Source: InterPro
Cellular component	cytoplasm Inferred from electronic annotation. Source: InterPro
Molecular function	ATP binding Inferred from electronic annotation. Source: UniProtKB-KW lysine-tRNA ligase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	A5FR12 [UniParc]. Last modified June 12, 2007. Version 1. Checksum: A3E58CF5B75F680E	FASTA	309	35,852
	10 20 30 40 50 60 MYSDERQRLG RLEDNLKSRM QILGLIRSFF NEQGFLEVET PVFVPSVAPE RYIKPVECQN 70 80 90 100 110 120 GYLSTSPELY MKRMLASGYT NIYQISRCFR DGEKGRHHNP EFSMLEWYRV GADYLQMIND 130 140 150 160 170 180 TENLFYHISM KLFGKPQIRY LGHDIDLTPP WERLTVRDAF LNTVGWDPVN TDDEKRFDED 190 200 210 220 230 240 LVLKVIPSFQ SHRPTVLLDY PAKMASLARL KKTNPEVAER AEFFISGLEM ANAYSELTNP 250 260 270 280 290 300 LEQSARFAEE KKLIEAEQNR RVVTPEIFLE AVKYLPVCTG NALGIDRLVM FFCNTDQIQD VMPFTADTA

References

[1]

"Complete sequence of Dehalococcoides sp. BAV1." Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Pitluck S., Lowry S., Clum A., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Kim E., Ritalahti K.M., Loeffler F., Richardson P. Submitted (MAY-2007) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: BAV1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000688 Genomic DNA. Translation: ABQ17370.1.
RefSeq	YP_001214248.1. NC_009455.1.
3D structure databases
ProteinModelPortal	A5FR12.
ModBase	Search...
Protein-protein interaction databases
STRING	A5FR12.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	5131600.
GenomeReviews	Gene locus DehaBAV1_0787 in contig CP000688_GR.
KEGG	deb:DehaBAV1_0787.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG1190.
HOGENOM	HBG631383.
OMA	MPEASGI.
ProtClustDB	CLSK837230.
Family and domain databases
InterPro	IPR004364. aa-tRNA-synt_II. IPR018150. aa-tRNA-synt_II-like. IPR006195. aa-tRNA-synth_II. IPR004525. Lys-tRNA-synth-rel. IPR018149. Lys-tRNA-synth_II_C. [Graphical view]
KO	K04568.
PANTHER	PTHR22594. aa-tRNA-synt_II. 1 hit. PTHR22594:SF7. PTHR22594:SF7. 1 hit.
Pfam	PF00152. tRNA-synt_2. 1 hit. [Graphical view]
PRINTS	PR00982. TRNASYNTHLYS.
TIGRFAMs	TIGR00462. GenX. 1 hit.
PROSITE	PS50862. AA_TRNA_LIGASE_II. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

A5FR12_DEHSB

Accession

Primary (citable) accession number: A5FR12

Entry history

Integrated into UniProtKB/TrEMBL:	June 12, 2007
Last sequence update:	June 12, 2007
Last modified:	November 16, 2011
This is version 34 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)