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A5FKW3 (ARAA_FLAJ1) Reviewed, UniProtKB/Swiss-Prot

Last modified January 25, 2012. Version 32. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
L-arabinose isomerase
EC=5.3.1.4
Gene names
Name:araA
Ordered Locus Names:Fjoh_1121
OrganismFlavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) (Cytophaga johnsonae) [Complete proteome] [HAMAP]
Taxonomic identifier376686 [NCBI]
Taxonomic lineageBacteria › Bacteroidetes › Flavobacteriia › Flavobacteriales › Flavobacteriaceae › Flavobacterium

Protein attributes

Sequence length502 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Catalyzes the conversion of L-arabinose to L-ribulose By similarity. HAMAP MF_00519

Catalytic activity

L-arabinose = L-ribulose. HAMAP MF_00519

Cofactor

Binds 1 manganese ion per subunit By similarity. HAMAP MF_00519

Pathway

Carbohydrate degradation; L-arabinose degradation via L-ribulose; D-xylulose 5-phosphate from L-arabinose (bacterial route): step 1/3. HAMAP MF_00519

Sequence similarities

Belongs to the arabinose isomerase family.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 502502L-arabinose isomerase HAMAP MF_00519
PRO_1000081677

Sites

Metal binding3061Manganese By similarity
Metal binding3331Manganese By similarity
Metal binding3501Manganese By similarity
Metal binding4491Manganese By similarity

Sequences

Sequence LengthMass (Da)Tools
A5FKW3 [UniParc].

Last modified June 12, 2007. Version 1.
Checksum: F2A58D84A2455505

FASTA50255,639
        10         20         30         40         50         60 
MIDISQKEVW FVVGSQELYG EETLRKVAEH SQIIAKGLDA SSSIPVKVVY KDVVKSPSQI 

        70         80         90        100        110        120 
LDVCLAANSA KNCIGIIAWM HTFSPAKMWI GGLNILKKPL CHLHTQYNAE IPWGSIDMDF 

       130        140        150        160        170        180 
MNLNQSAHGD REFGFIMSRL RKKRKVVVGH WEDQRVQKQL GIWSRVVLGW DELQNLKVAR 

       190        200        210        220        230        240 
IGDNMREVAV TEGDKVEAQI RFGMSVNGYD SSDVTKHIEK VTDKQLADLL AVYESSYNLT 

       250        260        270        280        290        300 
DSLKEGGAQR SSLVEAAKIE LGLRAFLEEG GFGAFTDTFE NLGVWKQLPG IATQRLMADG 

       310        320        330        340        350        360 
YGFGGEGDWK TAAMVRALKV MCIGLEGGTS FMEDYTYNFT PQKSYVLGSH MLEICPSIAD 

       370        380        390        400        410        420 
GKPSCEVHPL GIGGKEDPAR LVFNSPAGDA INVSLVDMGT RFRLIVNEVE AVKPMAELPK 

       430        440        450        460        470        480 
LPVARVLWDC KPNLEVAATA WILAGGAHHT VYSQSITTEY MEDFADIAGI ELLVIDEKTT 

       490        500 
VREFKDKINA NEAYFHLFQH GL

« Hide

References

[1]"Complete sequence of Flavobacterium johnsoniae UW101."
US DOE Joint Genome Institute
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Pitluck S., Goltsman E., Singan V., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Xie G., McBride M., Richardson P.
Submitted (APR-2007) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 17061 / DSM 2064 / UW101.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000685 Genomic DNA. Translation: ABQ04154.1.
RefSeqYP_001193473.1. NC_009441.1.

3D structure databases

ProteinModelPortalA5FKW3.
SMRA5FKW3. Positions 1-497.
ModBaseSearch...

Protein-protein interaction databases

STRINGA5FKW3.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID5090199.
GenomeReviewsGene locus Fjoh_1121 in contig CP000685_GR.
KEGGfjo:Fjoh_1121.
PATRIC21896541. VBIFlaJoh53613_1154.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG2160.
HOGENOMHBG297198.
OMAEVCPTIA.
ProtClustDBPRK02929.

Enzyme and pathway databases

BioCycFJOH376686:FJOH_1121-MONOMER.

Family and domain databases

HAMAPMF_00519. Arabinose_Isome.
[Tree]
InterProIPR024664. Ara_Isoase_C.
IPR004216. Fuc/Ara_isomerase_C.
IPR009015. Fucose_isomerase_N/cen.
IPR003762. Lara_isomerase.
[Graphical view]
KOK01804.
PfamPF11762. Arabinose_Iso_C. 1 hit.
PF02610. Arabinose_Isome. 1 hit.
[Graphical view]
PIRSFPIRSF001478. L-ara_isomerase. 1 hit.
ProDomPD018364. Lara_isomerase. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SUPFAMSSF50443. Fuc_isomerase_C. 1 hit.
SSF53743. Fuc_isomerase_N. 1 hit.
ProtoNetSearch...

Entry information

Entry nameARAA_FLAJ1
AccessionPrimary (citable) accession number: A5FKW3
Entry history
Integrated into UniProtKB/Swiss-Prot: May 20, 2008
Last sequence update: June 12, 2007
Last modified: January 25, 2012
This is version 32 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

PATHWAY comments

Index of metabolic and biosynthesis pathways

SIMILARITY comments

Index of protein domains and families

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