Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein
Submitted name:

Candidate alpha glycosidase Glycoside hydrolase family 13

Gene

Fjoh_1398

Organism
Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) (Cytophaga johnsonae)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. cation binding Source: InterPro
  2. hydrolase activity, acting on glycosyl bonds Source: UniProtKB-KW

GO - Biological processi

  1. carbohydrate metabolic process Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

GlycosidaseImported, Hydrolase

Enzyme and pathway databases

BioCyciFJOH376686:GIXN-1427-MONOMER.

Protein family/group databases

CAZyiGH13. Glycoside Hydrolase Family 13.

Names & Taxonomyi

Protein namesi
Submitted name:
Candidate alpha glycosidase Glycoside hydrolase family 13Imported
Gene namesi
Ordered Locus Names:Fjoh_1398Imported
OrganismiFlavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) (Cytophaga johnsonae)Imported
Taxonomic identifieri376686 [NCBI]
Taxonomic lineageiBacteriaBacteroidetesFlavobacteriiaFlavobacterialesFlavobacteriaceaeFlavobacterium
ProteomesiUP000006694: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2424 PotentialImportedAdd
BLAST
Chaini25 – 553529 PotentialImportedPRO_5000244073Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi376686.Fjoh_1398.

Structurei

3D structure databases

ProteinModelPortaliA5FK35.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Keywords - Domaini

SignalImported

Phylogenomic databases

eggNOGiCOG0366.
HOGENOMiHOG000273912.
KOiK01176.
OMAiLRSFMNW.
OrthoDBiEOG65QWH3.

Family and domain databases

Gene3Di3.20.20.80. 2 hits.
InterProiIPR015902. Glyco_hydro_13.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
[Graphical view]
SMARTiSM00642. Aamy. 1 hit.
[Graphical view]
SUPFAMiSSF51445. SSF51445. 2 hits.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

A5FK35-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MKKYTFLYLS LVFLIMGCSG SKSVTMNNTS KTPFVWEGAN VYFLLTDRFY
60 70 80 90 100
NGDTSNDVNF NRTKTPGKLR GFEGGDIIGI TKKIESGYFE KLGINAIWLT
110 120 130 140 150
PIVEQIHDGV DEGTGLSYGF HGYWAKDWTA LDPNFGTKED LANLVKKAHE
160 170 180 190 200
KGIRIILDGV INHTGPVTPE DPVWPSDWVR TGVVCDYKSF ENTTMCTLVD
210 220 230 240 250
NLPDIRTESV QEVELPLLLI EKWKKEDRYE KEIASLDEFF KRTGYPRTPK
260 270 280 290 300
YYIIKWLTDY ILEFGIDGYR ADTVKHTEEA LWADFKKECD YAFETWKKHH
310 320 330 340 350
PLQVLDQNPF YTIAEVYGYG ISGGQDYDFG DRKVNYFQNG FNSMINFEFK
360 370 380 390 400
WNAAQNDYEG LFSKYSNALN NDLKGYSVLN YMSSHDDGQP FDANRTKSIE
410 420 430 440 450
TANKLLLSPG MSQVYYGDES ARSLVIEGTQ GDATLRSNMN WEDIQNNPET
460 470 480 490 500
QKTLLHWQKL GQFRRNHPAV GAGVHKLINP YPYTFSRTFT KGSFIDKVVM
510 520 530 540 550
GVDLPKGRKE LPVGDVFPNG TKLKDTYSNQ EVEVIDGKVI IDNDFDIVLL

EEI
Length:553
Mass (Da):63,222
Last modified:June 12, 2007 - v1
Checksum:i9AF9B56C4F81A0F9
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000685 Genomic DNA. Translation: ABQ04430.1.
RefSeqiYP_001193749.1. NC_009441.1.

Genome annotation databases

EnsemblBacteriaiABQ04430; ABQ04430; Fjoh_1398.
GeneIDi5093181.
KEGGifjo:Fjoh_1398.
PATRICi21897121. VBIFlaJoh53613_1437.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000685 Genomic DNA. Translation: ABQ04430.1.
RefSeqiYP_001193749.1. NC_009441.1.

3D structure databases

ProteinModelPortaliA5FK35.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi376686.Fjoh_1398.

Protein family/group databases

CAZyiGH13. Glycoside Hydrolase Family 13.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABQ04430; ABQ04430; Fjoh_1398.
GeneIDi5093181.
KEGGifjo:Fjoh_1398.
PATRICi21897121. VBIFlaJoh53613_1437.

Phylogenomic databases

eggNOGiCOG0366.
HOGENOMiHOG000273912.
KOiK01176.
OMAiLRSFMNW.
OrthoDBiEOG65QWH3.

Enzyme and pathway databases

BioCyciFJOH376686:GIXN-1427-MONOMER.

Family and domain databases

Gene3Di3.20.20.80. 2 hits.
InterProiIPR015902. Glyco_hydro_13.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
[Graphical view]
SMARTiSM00642. Aamy. 1 hit.
[Graphical view]
SUPFAMiSSF51445. SSF51445. 2 hits.
ProtoNetiSearch...

Publicationsi

  1. "Novel features of the polysaccharide-digesting gliding bacterium Flavobacterium johnsoniae as revealed by genome sequence analysis."
    McBride M.J., Xie G., Martens E.C., Lapidus A., Henrissat B., Rhodes R.G., Goltsman E., Wang W., Xu J., Hunnicutt D.W., Staroscik A.M., Hoover T.R., Cheng Y.Q., Stein J.L.
    Appl. Environ. Microbiol. 75:6864-6875(2009) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 17061 / DSM 2064 / UW101Imported.

Entry informationi

Entry nameiA5FK35_FLAJ1
AccessioniPrimary (citable) accession number: A5FK35
Entry historyi
Integrated into UniProtKB/TrEMBL: June 12, 2007
Last sequence update: June 12, 2007
Last modified: February 4, 2015
This is version 49 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.