Skip Header

You are using a version of Internet Explorer that may not display all features of this website. Please upgrade to a modern browser.
Contribute Send feedback
Read comments (?) or add your own

A5FK35 (A5FK35_FLAJ1) Unreviewed, UniProtKB/TrEMBL

Last modified November 13, 2013. Version 43. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein names
Gene names
Ordered Locus Names:Fjoh_1398 EMBL ABQ04430.1
OrganismFlavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) (Cytophaga johnsonae) [Complete proteome] [HAMAP] EMBL ABQ04430.1
Taxonomic identifier376686 [NCBI]
Taxonomic lineageBacteriaBacteroidetesFlavobacteriiaFlavobacterialesFlavobacteriaceaeFlavobacterium

Protein attributes

Sequence length553 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existencePredicted

Ontologies

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Signal peptide1 – 2424 Potential EMBL ABQ04430.1
Chain25 – 553529 Potential EMBL ABQ04430.1
PRO_5000244073

Sequences

Sequence LengthMass (Da)Tools
A5FK35 [UniParc].

Last modified June 12, 2007. Version 1.
Checksum: 9AF9B56C4F81A0F9

FASTA55363,222
        10         20         30         40         50         60 
MKKYTFLYLS LVFLIMGCSG SKSVTMNNTS KTPFVWEGAN VYFLLTDRFY NGDTSNDVNF 

        70         80         90        100        110        120 
NRTKTPGKLR GFEGGDIIGI TKKIESGYFE KLGINAIWLT PIVEQIHDGV DEGTGLSYGF 

       130        140        150        160        170        180 
HGYWAKDWTA LDPNFGTKED LANLVKKAHE KGIRIILDGV INHTGPVTPE DPVWPSDWVR 

       190        200        210        220        230        240 
TGVVCDYKSF ENTTMCTLVD NLPDIRTESV QEVELPLLLI EKWKKEDRYE KEIASLDEFF 

       250        260        270        280        290        300 
KRTGYPRTPK YYIIKWLTDY ILEFGIDGYR ADTVKHTEEA LWADFKKECD YAFETWKKHH 

       310        320        330        340        350        360 
PLQVLDQNPF YTIAEVYGYG ISGGQDYDFG DRKVNYFQNG FNSMINFEFK WNAAQNDYEG 

       370        380        390        400        410        420 
LFSKYSNALN NDLKGYSVLN YMSSHDDGQP FDANRTKSIE TANKLLLSPG MSQVYYGDES 

       430        440        450        460        470        480 
ARSLVIEGTQ GDATLRSNMN WEDIQNNPET QKTLLHWQKL GQFRRNHPAV GAGVHKLINP 

       490        500        510        520        530        540 
YPYTFSRTFT KGSFIDKVVM GVDLPKGRKE LPVGDVFPNG TKLKDTYSNQ EVEVIDGKVI 

       550 
IDNDFDIVLL EEI 

« Hide

References

[1]"Complete sequence of Flavobacterium johnsoniae UW101."
US DOE Joint Genome Institute
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Pitluck S., Goltsman E., Singan V., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Xie G., McBride M., Richardson P.
Submitted (APR-2007) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 17061 / DSM 2064 / UW101.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000685 Genomic DNA. Translation: ABQ04430.1.
RefSeqYP_001193749.1. NC_009441.1.

3D structure databases

ProteinModelPortalA5FK35.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING376686.Fjoh_1398.

Protein family/group databases

CAZyGH13. Glycoside Hydrolase Family 13.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABQ04430; ABQ04430; Fjoh_1398.
GeneID5093181.
KEGGfjo:Fjoh_1398.
PATRIC21897121. VBIFlaJoh53613_1437.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0366.
HOGENOMHOG000273912.
KOK01176.
OMAGQNWHSF.
OrthoDBEOG65QWH3.
ProtClustDBCLSK845526.

Enzyme and pathway databases

BioCycFJOH376686:GIXN-1427-MONOMER.

Family and domain databases

Gene3D3.20.20.80. 2 hits.
InterProIPR015902. Glyco_hydro_13.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERPTHR10357. PTHR10357. 1 hit.
PfamPF00128. Alpha-amylase. 1 hit.
[Graphical view]
SMARTSM00642. Aamy. 1 hit.
[Graphical view]
SUPFAMSSF51445. SSF51445. 2 hits.
ProtoNetSearch...

Entry information

Entry nameA5FK35_FLAJ1
AccessionPrimary (citable) accession number: A5FK35
Entry history
Integrated into UniProtKB/TrEMBL: June 12, 2007
Last sequence update: June 12, 2007
Last modified: November 13, 2013
This is version 43 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)