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A5FII4 (A5FII4_FLAJ1) Unreviewed, UniProtKB/TrEMBL

Last modified December 14, 2011. Version 33. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
Candidate alpha amylase; Glycoside hydrolase family 13 EMBL ABQ04980.1
Gene names
Ordered Locus Names:Fjoh_1948
OrganismFlavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) (Cytophaga johnsonae) [Complete proteome] [HAMAP]
Taxonomic identifier376686 [NCBI]
Taxonomic lineageBacteria › Bacteroidetes › Flavobacteriia › Flavobacteriales › Flavobacteriaceae › Flavobacterium

Protein attributes

Sequence length479 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existencePredicted

Ontologies

Keywords
   DomainSignal EMBL ABQ04980.1
   Molecular functionHydrolase EMBL ABQ04980.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological processcarbohydrate metabolic process

Inferred from electronic annotation. Source: InterPro

   Molecular functioncalcium ion binding

Inferred from electronic annotation. Source: InterPro

hydrolase activity, hydrolyzing O-glycosyl compounds

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Signal peptide1 – 2525 Potential EMBL ABQ04980.1
Chain26 – 479454 Potential EMBL ABQ04980.1
PRO_5000243915

Sequences

Sequence LengthMass (Da)Tools
A5FII4 [UniParc].

Last modified June 12, 2007. Version 1.
Checksum: D572A6487221A3AF

FASTA47954,146
        10         20         30         40         50         60 
MKKPIARLCF VMALTGLLYS CSQNETNDVD SKAESQQFKI INVTHHDGKP FSTGKSSSLT 

        70         80         90        100        110        120 
GKYVDNPGGG VMMQAFYWDV PAGGTWWDTV KGKVTAWGNA GIGSIWLPPA SKAQNGAFSM 

       130        140        150        160        170        180 
GYDPTDYFDF GDYNQNGSTE TRFGSKAELV SLITAAHNEN IKVYADIVIN HNSGGQSEAN 

       190        200        210        220        230        240 
PFTGTNTWTN FTGVASGKFP RNYNDFYKNS YGNNDEGSFG GFPDLCHAAP NVQNWLWLRA 

       250        260        270        280        290        300 
DGVGKYYKNT MKFDGWRFDY VKGFGAWVVN AWNSNVGGFS VGELWDSNVN VLNDWANNAN 

       310        320        330        340        350        360 
SSVFDFACYY KMNDAFDGNN LALLNDDMMW KRNPYKAVTF VTNHDTDEIW SKMLAYSYIL 

       370        380        390        400        410        420 
THEGYPTIFY RDYEEWLDKN KLNNLIWIHN NKATGTTSIL YSDNDEYVAR RNGYNGNPGL 

       430        440        450        460        470 
VVYINNSDSW QERWIQTNWA NTQIKDFTGN SSWYPTTQAD KWVKIQCPPR GYSIWSINQ

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References

[1]"Complete sequence of Flavobacterium johnsoniae UW101."
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Pitluck S., Goltsman E., Singan V., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Xie G., McBride M., Richardson P.
Submitted (APR-2007) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 17061 / DSM 2064 / UW101.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000685 Genomic DNA. Translation: ABQ04980.1.
RefSeqYP_001194299.1. NC_009441.1.

3D structure databases

ProteinModelPortalA5FII4.
SMRA5FII4. Positions 61-477.
ModBaseSearch...

Protein-protein interaction databases

STRINGA5FII4.

Protein family/group databases

CAZyGH13. Glycoside Hydrolase Family 13.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID5091684.
GenomeReviewsGene locus Fjoh_1948 in contig CP000685_GR.
KEGGfjo:Fjoh_1948.
PATRIC21898271. VBIFlaJoh53613_1997.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0366.
HOGENOMHBG478148.
OMAYRDYEEW.
ProtClustDBPRK09441.

Family and domain databases

InterProIPR013776. A-amylase_thermo.
IPR015237. Alpha-amylase_C_pro.
IPR015902. Alpha_amylase.
IPR006046. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR013781. Glyco_hydro_subgr_catalytic.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
Gene3DG3DSA:2.60.40.1180. Glyco_hydro_13_b. 1 hit.
G3DSA:3.20.20.80. Glyco_hydro_cat. 1 hit.
KOK01176.
PANTHERPTHR10357. Alpha_amylase. 1 hit.
PfamPF00128. Alpha-amylase. 1 hit.
PF09154. DUF1939. 1 hit.
[Graphical view]
PIRSFPIRSF001021. Alph-amls_thrmst. 1 hit.
PRINTSPR00110. ALPHAAMYLASE.
SUPFAMSSF51445. Glyco_hydro_cat. 1 hit.
ProtoNetSearch...

Entry information

Entry nameA5FII4_FLAJ1
AccessionPrimary (citable) accession number: A5FII4
Entry history
Integrated into UniProtKB/TrEMBL: June 12, 2007
Last sequence update: June 12, 2007
Last modified: December 14, 2011
This is version 33 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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