A5FGA8 (A5FGA8_FLAJ1) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
DNA-(Apurinic or apyrimidinic site) lyase / endonuclease III EMBL ABQ05762.1
EC=3.2.2.- EMBL ABQ05762.1
EC=4.2.99.18 EMBL ABQ05762.1

Gene names

Ordered Locus Names:

Fjoh_2740 EMBL ABQ05762.1

Organism

Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) (Cytophaga johnsonae) [Complete proteome] [HAMAP] EMBL ABQ05762.1

Taxonomic identifier

376686 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Bacteroidetes/Chlorobi group › Bacteroidetes › Flavobacteriia › Flavobacteriales › Flavobacteriaceae › Flavobacterium › Flavobacterium johnsoniae

Protein attributes

Sequence length	216 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Endonuclease EMBL ABQ05762.1 Glycosidase EMBL ABQ05762.1 Hydrolase Lyase EMBL ABQ05762.1 Nuclease
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	base-excision repair Inferred from electronic annotation. Source: InterPro
Molecular_function	4 iron, 4 sulfur cluster binding Inferred from electronic annotation. Source: InterPro DNA binding Inferred from electronic annotation. Source: InterPro DNA-(apurinic or apyrimidinic site) lyase activity Inferred from electronic annotation. Source: EC endonuclease activity Inferred from electronic annotation. Source: UniProtKB-KW hydrolase activity, acting on glycosyl bonds Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	A5FGA8 [UniParc]. Last modified June 12, 2007. Version 1. Checksum: 1AF5E613A499A00D	FASTA	216	24,516
	10 20 30 40 50 60 MDLFGETENW ETKLKPILKK YKHKKHPLDY QNTYQLLVMV VLSAQDSDAN INKIAPALFE 70 80 90 100 110 120 KYPTLKSLSK ADIDTFISYI SKVRNYPTKA QWLLEIAHTI QNDNDIPLTM SGLTALKGIG 130 140 150 160 170 180 RKSANVILRE TEQPAEGIIA DLHVIRVAPR IGIIKESKDG NKVEKDLMQA LPKSIWSEIG 190 200 210 MAISFLGREI CRPKPKCEEC LLTEICLYYN TVVLKN

References

[1]

"Complete sequence of Flavobacterium johnsoniae UW101." US DOE Joint Genome Institute Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Pitluck S., Goltsman E., Singan V., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Xie G., McBride M., Richardson P. Submitted (APR-2007) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 17061 / DSM 2064 / UW101.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000685 Genomic DNA. Translation: ABQ05762.1.
RefSeq	YP_001195081.1. NC_009441.1.
3D structure databases
ProteinModelPortal	A5FGA8.
ModBase	Search...
Protein-protein interaction databases
STRING	376686.Fjoh_2740.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ABQ05762; ABQ05762; Fjoh_2740.
GeneID	5090536.
KEGG	fjo:Fjoh_2740.
PATRIC	21899967. VBIFlaJoh53613_2829.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0177.
HOGENOM	HOG000252208.
KO	K10773.
OMA	DSDANIN.
Enzyme and pathway databases
BioCyc	FJOH376686:GIXN-2804-MONOMER.
Family and domain databases
Gene3D	1.10.1670.10. 1 hit. 1.10.340.30. 1 hit.
InterPro	IPR011257. DNA_glycosylase. IPR005759. Endonuclease-III_Nth. IPR003651. Endouclease3_FeS-loop_motif. IPR003265. HhH-GPD_domain. IPR003583. Hlx-hairpin-Hlx_DNA-bd_motif. IPR023170. HTH_base_excis_C. [Graphical view]
Pfam	PF00730. HhH-GPD. 1 hit. [Graphical view]
PIRSF	PIRSF001435. Nth. 1 hit.
SMART	SM00478. ENDO3c. 1 hit. SM00525. FES. 1 hit. SM00278. HhH1. 1 hit. [Graphical view]
SUPFAM	SSF48150. DNA_glycsylse. 1 hit.
ProtoNet	Search...

Entry information

Entry name

A5FGA8_FLAJ1

Accession

Primary (citable) accession number: A5FGA8

Entry history

Integrated into UniProtKB/TrEMBL:	June 12, 2007
Last sequence update:	June 12, 2007
Last modified:	May 29, 2013
This is version 40 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)