A5FF90 (A5FF90_FLAJ1) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Polygalacturonase-like protein; Glycoside hydrolase family 28 EMBL ABQ06132.1

Gene names

Ordered Locus Names:

Fjoh_3115

Organism

Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) (Cytophaga johnsonae) [Complete proteome] [HAMAP]

Taxonomic identifier

376686 [NCBI]

Taxonomic lineage

Bacteria › Bacteroidetes › Flavobacteriia › Flavobacteriales › Flavobacteriaceae › Flavobacterium

Protein attributes

Sequence length	509 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is further processed into a mature form.
Protein existence	Predicted

Ontologies

Keywords
Domain	Signal EMBL ABQ06132.1
Molecular function	Hydrolase EMBL ABQ06132.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	carbohydrate metabolic process Inferred from electronic annotation. Source: InterPro
Molecular function	polygalacturonase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Signal peptide	1 – 21	21	Potential EMBL ABQ06132.1
	Chain	22 – 509	488	Potential EMBL ABQ06132.1		PRO_5000243616

Sequences

	Sequence		Length	Mass (Da)
	A5FF90 [UniParc]. Last modified June 12, 2007. Version 1. Checksum: AA4F4D9C2E718F9C	FASTA	509	56,517
	10 20 30 40 50 60 MKINFKIVLL IFCISLSVSA QKVFDIKKYG AVGDGKTLNT KAIQKAIDAA NKSKGGKVLF 70 80 90 100 110 120 SKGTFLSGSI VLKSDVELFF EEGAILLGST NPEDYPKYDG IRAFIIASDS KNIAVNGKGI 130 140 150 160 170 180 IDGQGRELAL AIDSLHHTGV RIDPKYNYRR MRPEDGRGKL ISFVKCDSIT MTQITLKNSP 190 200 210 220 230 240 GWTQCFRECK NIIIDFMKVE SRAYWNNDGI DLDGCENARI TNCNVNAADD GICLKSEVPG 250 260 270 280 290 300 LHNNNIYIGN CTIRSSANAV KFGTGSYGSF KNVTIENIKV FDTFRSAVAI ESVDGAEIEN 310 320 330 340 350 360 IKVSDITAVN TGNAILIRLG HRNGEKAGYI KNVSVKNVKV QIPFGRPDID YDMRGPEVDY 370 380 390 400 410 420 FHNPFPSSIA GIPGHLIENV TLENIEIIYP GKASKGMAYH PLSRLKDVKE NINGYPEFTM 430 440 450 460 470 480 FGELPSWGFY VRHVHGIQMK NIKLVLDKED FRPAFVFDDV KDLTMKTIDV PSDKINQIVF 490 500 KDVLSSNLDS ESLKRKIEPE QNKFELPSK

References

[1]

"Complete sequence of Flavobacterium johnsoniae UW101." Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Pitluck S., Goltsman E., Singan V., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Xie G., McBride M., Richardson P. Submitted (APR-2007) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 17061 / DSM 2064 / UW101.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000685 Genomic DNA. Translation: ABQ06132.1.
RefSeq	YP_001195451.1. NC_009441.1.
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	A5FF90.
Protein family/group databases
CAZy	GH28. Glycoside Hydrolase Family 28.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	5093111.
GenomeReviews	Gene locus Fjoh_3115 in contig CP000685_GR.
KEGG	fjo:Fjoh_3115.
PATRIC	21900769. VBIFlaJoh53613_3227.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG5434.
OMA	VNSPWDD.
ProtClustDB	CLSK2537763.
Family and domain databases
InterPro	IPR000743. Glyco_hydro_28. IPR006626. PbH1. IPR012334. Pectin_lyas_fold. IPR011050. Pectin_lyase_fold/virulence. [Graphical view]
Gene3D	G3DSA:2.160.20.10. Pectin_lyas_fold. 2 hits.
Pfam	PF00295. Glyco_hydro_28. 1 hit. [Graphical view]
SMART	SM00710. PbH1. 5 hits. [Graphical view]
SUPFAM	SSF51126. Pectin_lyas_like. 1 hit.
ProtoNet	Search...

Entry information

Entry name

A5FF90_FLAJ1

Accession

Primary (citable) accession number: A5FF90

Entry history

Integrated into UniProtKB/TrEMBL:	June 12, 2007
Last sequence update:	June 12, 2007
Last modified:	December 14, 2011
This is version 27 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)