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A5FD23 (A5FD23_FLAJ1) Unreviewed, UniProtKB/TrEMBL

Last modified December 14, 2011. Version 28. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
Candidate beta-xylosidase/alpha-L-arabinofuranosidase; Glycoside hydrolase family 43 EMBL ABQ06891.1
Gene names
Ordered Locus Names:Fjoh_3880
OrganismFlavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) (Cytophaga johnsonae) [Complete proteome] [HAMAP]
Taxonomic identifier376686 [NCBI]
Taxonomic lineageBacteria › Bacteroidetes › Flavobacteriia › Flavobacteriales › Flavobacteriaceae › Flavobacterium

Protein attributes

Sequence length571 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existencePredicted

Ontologies

Keywords
   DomainSignal EMBL ABQ06891.1
   Molecular functionHydrolase EMBL ABQ06891.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological processcarbohydrate metabolic process

Inferred from electronic annotation. Source: InterPro

   Molecular functionhydrolase activity, hydrolyzing O-glycosyl compounds

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Signal peptide1 – 2525 Potential EMBL ABQ06891.1
Chain26 – 571546 Potential EMBL ABQ06891.1
PRO_5000243416

Sequences

Sequence LengthMass (Da)Tools
A5FD23 [UniParc].

Last modified June 12, 2007. Version 1.
Checksum: 27EA291BF6E46F5C

FASTA57163,214
        10         20         30         40         50         60 
MIKGNIFFLL AAALLCSYTG TAQKKMQSKK TAVFSNVVYN GDDQIYKNNP LKPDEFYTPI 

        70         80         90        100        110        120 
LQGCYPDPAI TKKGDDYYMV CSSFAMFPGV PIFHSKDLVN WTDLGGVLNN VSEFNPHDTG 

       130        140        150        160        170        180 
ISAGVYAPGI TYNPHNDTFY MIVTAFSGGL GNIIVKTKDP MKGWGSPIKL DFGGIDPSIF 

       190        200        210        220        230        240 
FDENGKGYIV HNDAPDKGKE LYEGHRVIKV WEYDLTTDKV IPGTDKIIVD GGVDLSKKPI 

       250        260        270        280        290        300 
WIEAPHLYKK NGKYYLMCAE GGTGGNHSEV IFTSDSPKGP FKPASNNPIL TQRYFPKDRA 

       310        320        330        340        350        360 
NKVDWAGHAD LIQGPDNKYY GVFLAIRPNE KDRVNIGRET FILPVDWSGE FPVFENGLVP 

       370        380        390        400        410        420 
MQPKLKMPAG VTNQTGKNGF FPNGNFTFTE NFTSQKLDYR WIGLRGPREN FSSVSKKGLE 

       430        440        450        460        470        480 
ITPFEVNIKE MKPTSTLFYR QQHNTFSFTA SVDYKLQSEK DLAGIVCLQN ERFNYVFGIT 

       490        500        510        520        530        540 
KKGNDTFIIL ERTEKGQSKI IASSKIKITN TLRLQVKAAG DNYEFSYAVN GVDFENLGGT 

       550        560        570 
VSGDILSTNA AGGFTGALVG LYATSANDAH P

« Hide

References

[1]"Complete sequence of Flavobacterium johnsoniae UW101."
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Pitluck S., Goltsman E., Singan V., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Xie G., McBride M., Richardson P.
Submitted (APR-2007) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 17061 / DSM 2064 / UW101.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000685 Genomic DNA. Translation: ABQ06891.1.
RefSeqYP_001196210.1. NC_009441.1.

3D structure databases

ProteinModelPortalA5FD23.
ModBaseSearch...

Protein-protein interaction databases

STRINGA5FD23.

Protein family/group databases

CAZyGH43. Glycoside Hydrolase Family 43.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID5093791.
GenomeReviewsGene locus Fjoh_3880 in contig CP000685_GR.
KEGGfjo:Fjoh_3880.
PATRIC21902351. VBIFlaJoh53613_4018.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG3507.
HOGENOMHBG347235.
OMAPIWIEAP.
ProtClustDBCLSK2537853.

Family and domain databases

InterProIPR008985. ConA-like_lec_gl.
IPR013320. ConA-like_subgrp.
IPR006710. Glyco_hydro_43.
IPR023296. Glyco_hydro_43_beta-prop.
[Graphical view]
Gene3DG3DSA:2.60.120.200. ConA_like_subgrp. 1 hit.
G3DSA:2.115.10.20. Glyco_hydro_43_beta-prop. 1 hit.
KOK01198.
K01209.
PANTHERPTHR22925. Glyco_hydro_43. 1 hit.
PfamPF04616. Glyco_hydro_43. 1 hit.
[Graphical view]
SUPFAMSSF49899. ConA_like_lec_gl. 1 hit.
SSF75005. Glyco_hydro_43_beta-prop. 1 hit.
ProtoNetSearch...

Entry information

Entry nameA5FD23_FLAJ1
AccessionPrimary (citable) accession number: A5FD23
Entry history
Integrated into UniProtKB/TrEMBL: June 12, 2007
Last sequence update: June 12, 2007
Last modified: December 14, 2011
This is version 28 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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