Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein
Submitted name:

DNA polymerase III, epsilon subunit related exonuclease

Gene

CKL_4034

Organism
Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

ExonucleaseImported, Hydrolase, Nuclease

Enzyme and pathway databases

BioCyciCKLU431943:GJF1-3954-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA polymerase III, epsilon subunit related exonucleaseImported
Gene namesi
Ordered Locus Names:CKL_4034Imported
Encoded oniPlasmid pCKL555AImported
OrganismiClostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680)Imported
Taxonomic identifieri431943 [NCBI]
Taxonomic lineageiBacteriaFirmicutesClostridiaClostridialesClostridiaceaeClostridium
ProteomesiUP000002411 Componenti: Plasmid pCKL555A

Structurei

3D structure databases

ProteinModelPortaliA5F9M6.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG2176.
HOGENOMiHOG000274354.
KOiK02342.
OMAiYVNPERS.
OrthoDBiEOG6ZWJJS.

Family and domain databases

Gene3Di3.30.420.10. 1 hit.
InterProiIPR006054. DnaQ.
IPR006055. Exonuclease.
IPR013520. Exonuclease_RNaseT/DNA_pol3.
IPR012337. RNaseH-like_dom.
[Graphical view]
PfamiPF00929. RNase_T. 1 hit.
[Graphical view]
SMARTiSM00479. EXOIII. 1 hit.
[Graphical view]
SUPFAMiSSF53098. SSF53098. 1 hit.
TIGRFAMsiTIGR00573. dnaq. 1 hit.

Sequencei

Sequence statusi: Complete.

A5F9M6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNNSTASKSD DLQHELEQYS QSLIKAKRNA KIFGILEFIF LIPGFMNPVL
60 70 80 90 100
AIFVFIFAIL FFSNYIKSKK ITKIINSLNN NTNKTIVSTN KENIIPKNLS
110 120 130 140 150
NNINKPDDIY LKKLTGKNKS INKSQGVFDN FVVVDLETTG LEPTRDYIIE
160 170 180 190 200
IAAAKYENNE IIDTYTTLVN PEVFIPPNIT NINHIDNDMV KDCPEIKEVL
210 220 230 240 250
PGFMNFIGQL PLVAHNAPFD IKFLNANLAL LGLYLNNPII DTLPISRKLF
260 270 280 290 300
SEIENHKLGT IKEYLNIDVQ DSHRALPDCY VCGQIYLEYS TKEKNKKALA
310 320 330 340 350
NIKLHSDIGL NKEECYSIVK EILKKHNKDL TYVRYGFTSN YFDIRAFYNF
360 370 380 390 400
LRLKLKGKKY YALLDNSLAE INSMIPDLTL KYEVAPKSES NKIRILINSP
410 420 430 440
EDLYILEPII IQAFDKCIDS MEYYRNNVSV AEKNIAEYLN T
Length:441
Mass (Da):50,591
Last modified:June 12, 2007 - v1
Checksum:i2893D0CADB6B3114
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000674 Genomic DNA. Translation: ABQ23633.1.
RefSeqiWP_011930380.1. NC_009466.1.

Genome annotation databases

EnsemblBacteriaiABQ23633; ABQ23633; CKL_4034.
KEGGickl:CKL_4034.
PATRICi19461312. VBICloKlu111549_0036.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000674 Genomic DNA. Translation: ABQ23633.1.
RefSeqiWP_011930380.1. NC_009466.1.

3D structure databases

ProteinModelPortaliA5F9M6.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABQ23633; ABQ23633; CKL_4034.
KEGGickl:CKL_4034.
PATRICi19461312. VBICloKlu111549_0036.

Phylogenomic databases

eggNOGiCOG2176.
HOGENOMiHOG000274354.
KOiK02342.
OMAiYVNPERS.
OrthoDBiEOG6ZWJJS.

Enzyme and pathway databases

BioCyciCKLU431943:GJF1-3954-MONOMER.

Family and domain databases

Gene3Di3.30.420.10. 1 hit.
InterProiIPR006054. DnaQ.
IPR006055. Exonuclease.
IPR013520. Exonuclease_RNaseT/DNA_pol3.
IPR012337. RNaseH-like_dom.
[Graphical view]
PfamiPF00929. RNase_T. 1 hit.
[Graphical view]
SMARTiSM00479. EXOIII. 1 hit.
[Graphical view]
SUPFAMiSSF53098. SSF53098. 1 hit.
TIGRFAMsiTIGR00573. dnaq. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Entry informationi

Entry nameiA5F9M6_CLOK5
AccessioniPrimary (citable) accession number: A5F9M6
Entry historyi
Integrated into UniProtKB/TrEMBL: June 12, 2007
Last sequence update: June 12, 2007
Last modified: July 22, 2015
This is version 58 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, PlasmidImported, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.