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A5F8C0 (A5F8C0_VIBC3) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 44. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Name:vgrG-1 EMBL ABQ19866.1
Ordered Locus Names:VC0395_A1026 EMBL ABQ19866.1, VC395_1535 EMBL ACP09541.1
OrganismVibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O395) [Complete proteome] [HAMAP] EMBL ABQ19866.1
Taxonomic identifier345073 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeVibrio

Protein attributes

Sequence length1095 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Nucleotide binding723 – 7275ADP PDB 4E1D
Nucleotide binding723 – 7275ATP PDB 4DTL PDB 4DTH
Region743 – 7442Sulfate 1 binding
Region854 – 8574Sulfate 6 binding PDB 4DTL PDB 4DTH PDB 4E1D PDB 4E1F PDB 4E1C PDB 4DTF
Region868 – 8703Sulfate 7 binding PDB 4DTH
Region902 – 9032Sulfate 10 binding PDB 4E1F

Sites

Metal binding7271Magnesium PDB 4DTH
Metal binding7271Manganese PDB 4DTL PDB 4E1D
Metal binding8731Magnesium PDB 4DTH
Metal binding8731Manganese PDB 4DTL PDB 4E1D
Metal binding10501Magnesium PDB 4DTH
Metal binding10501Manganese PDB 4DTL PDB 4E1D
Binding site7151ADP PDB 4E1D
Binding site7431Sulfate 2 PDB 4E1F
Binding site7611Sulfate 2 PDB 4E1F
Binding site7731Sulfate 4 PDB 4E1F
Binding site7921ADP; via carbonyl oxygen PDB 4E1D
Binding site7921ATP; via carbonyl oxygen PDB 4DTL PDB 4DTH
Binding site8121Sulfate 5 PDB 4DTL PDB 4DTH PDB 4E1D PDB 4E1F PDB 4E1C PDB 4DTF
Binding site8161Sulfate 5 PDB 4DTL PDB 4DTH PDB 4E1D PDB 4E1F PDB 4E1C PDB 4DTF
Binding site8351Sulfate 5; via amide nitrogen PDB 4DTL PDB 4DTH
Binding site8921Sulfate 9 PDB 4E1F
Binding site9421Sulfate 11 PDB 4DTH
Binding site9711Sulfate 12 PDB 4DTF
Binding site9711Sulfate 3 PDB 4DTL PDB 4DTH PDB 4E1D
Binding site9721Sulfate 8 PDB 4DTF
Binding site9791ADP PDB 4E1D
Binding site9791ATP PDB 4DTH
Binding site10091Sulfate 11 PDB 4DTH
Binding site10521Sulfate 12 PDB 4DTF
Binding site10521Sulfate 3 PDB 4DTL PDB 4DTH PDB 4E1D

Sequences

Sequence LengthMass (Da)Tools
A5F8C0 [UniParc].

Last modified June 12, 2007. Version 1.
Checksum: 3419E1AF253018FB

FASTA1,095120,779
        10         20         30         40         50         60 
MATLAYSIEV EGLEDETLVV RGFHGQESLS NSVFLGQACY GFRYEVQLAS RVSNLTAEQM 

        70         80         90        100        110        120 
VDKRAELKLY RNSQLVQRVH GIVRAFSQGD IGHHHTFYQL TLVPALERLS LRHNSRIFQK 

       130        140        150        160        170        180 
QTVPEILSIL LQEMGINDYA FALKRDGVQR EFCVQYRESD IDFLHRLAAE EGLVYSFVHE 

       190        200        210        220        230        240 
AGKHTLYFSD ASDSLSKLPE PIPYNALVGG AIDTPYIHGL TYRTQAEVSE VQLKDYSFKK 

       250        260        270        280        290        300 
PAYSFLQTVQ GTELDYQQTR YQHFDAPGRY KDDVNGAAFS QIRLDYLRRH AHTATGQSNE 

       310        320        330        340        350        360 
PLLRAGYKFD LQEHLDPAMN RDWVVVSINH QGEQPQALQE DGGSGATTYS NQFSLIPGHL 

       370        380        390        400        410        420 
HWRAEPQPKP QVDGPMIATV VGPEGEEIFC DEHGRVKIHF PWDRYSNGNE QSSCWVRVSQ 

       430        440        450        460        470        480 
GWAGSQYGFI AIPRIGHEVI VEFLNGDPDQ PIITGRTYHA TNTPPYTLPE HKTKTVLRTE 

       490        500        510        520        530        540 
THQGEGFNEL SFEDQAGKEQ IYLHAQKDFD GLIENDQFTQ IKHNQHLTVE WESREAVTGE 

       550        560        570        580        590        600 
QVLSIEGSLH VKTGKVRVNE AGTEIHVKAG QKVVIEAGSE ITVKAGGSFV KVDPAGVHLS 

       610        620        630        640        650        660 
GALVNLNSGG SAGSGSGFGG AMPALPGGLE PAVALAPPQT ISYQALLQAE QANVPAVKVC 

       670        680        690        700        710        720 
PLAAQEATPA VNSITPPPPP PIAPPMAPPQ PIMNPQPTAN AQPNLGRSTK ATPDFPTHFP 

       730        740        750        760        770        780 
KSSIGIENEL AGLVVAMPAN SAQKFGYVKS AQGDALFMLT KDMNQGSYQR PPSLQDGKNY 

       790        800        810        820        830        840 
QNWQTHTVEL VSYPCEMDDK AAVETRKQAM LWLATHFTTH IDQSNHQPLA PIQSEDGRFV 

       850        860        870        880        890        900 
IEITNAKHVI AAGNGISAES QGQTITMTPS GQQATVGVAA KGFGTSATPE LRLLESAPWY 

       910        920        930        940        950        960 
QKSLKSQFAS LTSAENLDDK ELAANVFAYL TSIYLKTAEL AKKFGIYINE WDPMSEQITP 

       970        980        990       1000       1010       1020 
NANGLTDPKV KNAWEILPRT KPSKIVEILS KSDAKAVMKH IKPQLQSRYS ESLSKNVFQY 

      1030       1040       1050       1060       1070       1080 
FQDGGEVAGH GINNATVGDK HSPELAILFE FRTVPNELQS YLPKTESTTK SEVKLLDQFD 

      1090 
PMKRKTVIQQ VESLV 

« Hide

References

[1]Heidelberg J.
Submitted (MAR-2007) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 39541 / Classical Ogawa 395 / O395 and O395 EMBL ABQ19866.1.
[2]"A recalibrated molecular clock and independent origins for the cholera pandemic clones."
Feng L., Reeves P.R., Lan R., Ren Y., Gao C., Zhou Z., Ren Y., Cheng J., Wang W., Wang J., Qian W., Li D., Wang L.
PLoS ONE 3:E4053-E4053(2008) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 39541 / Classical Ogawa 395 / O395 and O395 EMBL ACP09541.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000627 Genomic DNA. Translation: ABQ19866.1.
CP001235 Genomic DNA. Translation: ACP09541.1.
RefSeqYP_001216972.1. NC_009457.1.
YP_002819777.1. NC_012582.1.

3D structure databases

PDBe
RCSB PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
4DTDX-ray2.50A700-1095[»]
4DTFX-ray2.12A700-1095[»]
4DTHX-ray1.78A700-1095[»]
4DTLX-ray2.39A701-1095[»]
4E1CX-ray2.25A700-1095[»]
4E1DX-ray2.49A700-1095[»]
4E1FX-ray2.10A700-1095[»]
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING345073.VC0395_A1026.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABQ19866; ABQ19866; VC0395_A1026.
ACP09541; ACP09541; VC395_1535.
GeneID5135888.
7776890.
KEGGvco:VC0395_A1026.
vcr:VC395_1535.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG2931.
HOGENOMHOG000218180.
KOK11904.
OMALIENDQF.
ProtClustDBCLSK874362.

Family and domain databases

Gene3D2.40.50.230. 1 hit.
InterProIPR006531. Gp5_N-like_dom.
IPR017847. T6SS_RhsGE_Vgr_subset.
IPR006533. T6SS_Vgr_RhsGE.
[Graphical view]
PfamPF04717. Phage_base_V. 1 hit.
[Graphical view]
TIGRFAMsTIGR01646. vgr_GE. 1 hit.
TIGR03361. VI_Rhs_Vgr. 1 hit.
ProtoNetSearch...

Entry information

Entry nameA5F8C0_VIBC3
AccessionPrimary (citable) accession number: A5F8C0
Entry history
Integrated into UniProtKB/TrEMBL: June 12, 2007
Last sequence update: June 12, 2007
Last modified: April 16, 2014
This is version 44 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)