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A5F8C0

- A5F8C0_VIBC3

UniProt

A5F8C0 - A5F8C0_VIBC3

Protein
Submitted name:

VgrG protein

Gene

vgrG-1

Organism
Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O395)
Status
Unreviewed - Annotation score: 1 out of 5- Experimental evidence at protein leveli
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    • History
      Entry version 47 (01 Oct 2014)
      Sequence version 1 (12 Jun 2007)
      Previous versions | rss
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    Functioni

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Binding sitei715 – 7151ADPImported
    Binding sitei723 – 7231ATPanalogImported
    Metal bindingi727 – 7271MagnesiumImported
    Metal bindingi727 – 7271ManganeseImported
    Binding sitei792 – 7921ADP; via carbonyl oxygenImported
    Binding sitei792 – 7921ATP; via carbonyl oxygenImported
    Binding sitei792 – 7921ATPanalog; via carbonyl oxygenImported
    Metal bindingi873 – 8731MagnesiumImported
    Metal bindingi873 – 8731ManganeseImported
    Binding sitei979 – 9791ADPImported
    Binding sitei979 – 9791ATPImported
    Metal bindingi1050 – 10501MagnesiumImported
    Metal bindingi1050 – 10501ManganeseImported

    Regions

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Nucleotide bindingi723 – 7275ADPImported
    Nucleotide bindingi723 – 7275ATPImported

    GO - Molecular functioni

    1. ATP binding Source: UniProtKB-KW
    2. metal ion binding Source: UniProtKB-KW

    Keywords - Ligandi

    ATP-bindingImported, MagnesiumImported, ManganeseImported, Metal-bindingImported, Nucleotide-binding

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    VgrG proteinImported
    Gene namesi
    Name:vgrG-1Imported
    Ordered Locus Names:VC0395_A1026Imported, VC395_1535Imported
    OrganismiVibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O395)Imported
    Taxonomic identifieri345073 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeVibrio
    ProteomesiUP000001630: Chromosome I, UP000000249: Chromosome 2

    Interactioni

    Protein-protein interaction databases

    STRINGi345073.VC0395_A1026.

    Structurei

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    4DTDX-ray2.50A700-1095[»]
    4DTFX-ray2.12A700-1095[»]
    4DTHX-ray1.78A700-1095[»]
    4DTLX-ray2.39A701-1095[»]
    4E1CX-ray2.25A700-1095[»]
    4E1DX-ray2.49A700-1095[»]
    4E1FX-ray2.10A700-1095[»]
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Region

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Regioni743 – 7442Sulfate 1 binding

    Phylogenomic databases

    eggNOGiCOG2931.
    HOGENOMiHOG000218180.
    KOiK11904.
    OMAiLIENDQF.

    Family and domain databases

    Gene3Di2.40.50.230. 1 hit.
    InterProiIPR006531. Gp5_N-like_dom.
    IPR017847. T6SS_RhsGE_Vgr_subset.
    IPR006533. T6SS_Vgr_RhsGE.
    [Graphical view]
    PfamiPF04717. Phage_base_V. 1 hit.
    [Graphical view]
    TIGRFAMsiTIGR01646. vgr_GE. 1 hit.
    TIGR03361. VI_Rhs_Vgr. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    A5F8C0-1 [UniParc]FASTAAdd to Basket

    « Hide

    MATLAYSIEV EGLEDETLVV RGFHGQESLS NSVFLGQACY GFRYEVQLAS     50
    RVSNLTAEQM VDKRAELKLY RNSQLVQRVH GIVRAFSQGD IGHHHTFYQL 100
    TLVPALERLS LRHNSRIFQK QTVPEILSIL LQEMGINDYA FALKRDGVQR 150
    EFCVQYRESD IDFLHRLAAE EGLVYSFVHE AGKHTLYFSD ASDSLSKLPE 200
    PIPYNALVGG AIDTPYIHGL TYRTQAEVSE VQLKDYSFKK PAYSFLQTVQ 250
    GTELDYQQTR YQHFDAPGRY KDDVNGAAFS QIRLDYLRRH AHTATGQSNE 300
    PLLRAGYKFD LQEHLDPAMN RDWVVVSINH QGEQPQALQE DGGSGATTYS 350
    NQFSLIPGHL HWRAEPQPKP QVDGPMIATV VGPEGEEIFC DEHGRVKIHF 400
    PWDRYSNGNE QSSCWVRVSQ GWAGSQYGFI AIPRIGHEVI VEFLNGDPDQ 450
    PIITGRTYHA TNTPPYTLPE HKTKTVLRTE THQGEGFNEL SFEDQAGKEQ 500
    IYLHAQKDFD GLIENDQFTQ IKHNQHLTVE WESREAVTGE QVLSIEGSLH 550
    VKTGKVRVNE AGTEIHVKAG QKVVIEAGSE ITVKAGGSFV KVDPAGVHLS 600
    GALVNLNSGG SAGSGSGFGG AMPALPGGLE PAVALAPPQT ISYQALLQAE 650
    QANVPAVKVC PLAAQEATPA VNSITPPPPP PIAPPMAPPQ PIMNPQPTAN 700
    AQPNLGRSTK ATPDFPTHFP KSSIGIENEL AGLVVAMPAN SAQKFGYVKS 750
    AQGDALFMLT KDMNQGSYQR PPSLQDGKNY QNWQTHTVEL VSYPCEMDDK 800
    AAVETRKQAM LWLATHFTTH IDQSNHQPLA PIQSEDGRFV IEITNAKHVI 850
    AAGNGISAES QGQTITMTPS GQQATVGVAA KGFGTSATPE LRLLESAPWY 900
    QKSLKSQFAS LTSAENLDDK ELAANVFAYL TSIYLKTAEL AKKFGIYINE 950
    WDPMSEQITP NANGLTDPKV KNAWEILPRT KPSKIVEILS KSDAKAVMKH 1000
    IKPQLQSRYS ESLSKNVFQY FQDGGEVAGH GINNATVGDK HSPELAILFE 1050
    FRTVPNELQS YLPKTESTTK SEVKLLDQFD PMKRKTVIQQ VESLV 1095
    Length:1,095
    Mass (Da):120,779
    Last modified:June 12, 2007 - v1
    Checksum:i3419E1AF253018FB
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000627 Genomic DNA. Translation: ABQ19866.1.
    CP001235 Genomic DNA. Translation: ACP09541.1.
    RefSeqiYP_001216972.1. NC_009457.1.
    YP_002819777.1. NC_012582.1.

    Genome annotation databases

    EnsemblBacteriaiABQ19866; ABQ19866; VC0395_A1026.
    ACP09541; ACP09541; VC395_1535.
    GeneIDi5135888.
    7776890.
    KEGGivco:VC0395_A1026.
    vcr:VC395_1535.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000627 Genomic DNA. Translation: ABQ19866.1 .
    CP001235 Genomic DNA. Translation: ACP09541.1 .
    RefSeqi YP_001216972.1. NC_009457.1.
    YP_002819777.1. NC_012582.1.

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    4DTD X-ray 2.50 A 700-1095 [» ]
    4DTF X-ray 2.12 A 700-1095 [» ]
    4DTH X-ray 1.78 A 700-1095 [» ]
    4DTL X-ray 2.39 A 701-1095 [» ]
    4E1C X-ray 2.25 A 700-1095 [» ]
    4E1D X-ray 2.49 A 700-1095 [» ]
    4E1F X-ray 2.10 A 700-1095 [» ]
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 345073.VC0395_A1026.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ABQ19866 ; ABQ19866 ; VC0395_A1026 .
    ACP09541 ; ACP09541 ; VC395_1535 .
    GeneIDi 5135888.
    7776890.
    KEGGi vco:VC0395_A1026.
    vcr:VC395_1535.

    Phylogenomic databases

    eggNOGi COG2931.
    HOGENOMi HOG000218180.
    KOi K11904.
    OMAi LIENDQF.

    Family and domain databases

    Gene3Di 2.40.50.230. 1 hit.
    InterProi IPR006531. Gp5_N-like_dom.
    IPR017847. T6SS_RhsGE_Vgr_subset.
    IPR006533. T6SS_Vgr_RhsGE.
    [Graphical view ]
    Pfami PF04717. Phage_base_V. 1 hit.
    [Graphical view ]
    TIGRFAMsi TIGR01646. vgr_GE. 1 hit.
    TIGR03361. VI_Rhs_Vgr. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. Heidelberg J.
      Submitted (MAR-2007) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 39541 / Classical Ogawa 395 / O395Imported and O395Imported.
    2. "A recalibrated molecular clock and independent origins for the cholera pandemic clones."
      Feng L., Reeves P.R., Lan R., Ren Y., Gao C., Zhou Z., Ren Y., Cheng J., Wang W., Wang J., Qian W., Li D., Wang L.
      PLoS ONE 3:E4053-E4053(2008) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 39541 / Classical Ogawa 395 / O395 and O395Imported.

    Entry informationi

    Entry nameiA5F8C0_VIBC3
    AccessioniPrimary (citable) accession number: A5F8C0
    Entry historyi
    Integrated into UniProtKB/TrEMBL: June 12, 2007
    Last sequence update: June 12, 2007
    Last modified: October 1, 2014
    This is version 47 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    3D-structureImported, Complete proteomeImported

    External Data

    Dasty 3