SubmitCancel

Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.

A5F8C0

- A5F8C0_VIBC3

UniProt

A5F8C0 - A5F8C0_VIBC3

(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

Protein
Submitted name:

VgrG protein

Gene
vgrG-1, VC0395_A1026, VC395_1535
Organism
Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O395)
Status
Unreviewed - Annotation score: 3 out of 5 - Experimental evidence at protein leveli

Functioni

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Binding sitei715 – 7151ADPImported
Metal bindingi727 – 7271MagnesiumImported
Metal bindingi727 – 7271ManganeseImported
Binding sitei743 – 7431Sulfate 2Imported
Binding sitei761 – 7611Sulfate 2Imported
Binding sitei773 – 7731Sulfate 4Imported
Binding sitei792 – 7921ADP; via carbonyl oxygenImported
Binding sitei792 – 7921ATP; via carbonyl oxygenImported
Binding sitei812 – 8121Sulfate 5Imported
Binding sitei816 – 8161Sulfate 5Imported
Binding sitei835 – 8351Sulfate 5; via amide nitrogenImported
Metal bindingi873 – 8731MagnesiumImported
Metal bindingi873 – 8731ManganeseImported
Binding sitei892 – 8921Sulfate 9Imported
Binding sitei942 – 9421Sulfate 11Imported
Binding sitei971 – 9711Sulfate 12Imported
Binding sitei971 – 9711Sulfate 3Imported
Binding sitei972 – 9721Sulfate 8Imported
Binding sitei979 – 9791ADPImported
Binding sitei979 – 9791ATPImported
Binding sitei1009 – 10091Sulfate 11Imported
Metal bindingi1050 – 10501MagnesiumImported
Metal bindingi1050 – 10501ManganeseImported
Binding sitei1052 – 10521Sulfate 12Imported
Binding sitei1052 – 10521Sulfate 3Imported

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Nucleotide bindingi723 – 7275ADPImported
Nucleotide bindingi723 – 7275ATPImported

GO - Molecular functioni

  1. ATP binding Source: UniProtKB-KW
  2. metal ion binding Source: UniProtKB-KW
Complete GO annotation...

Keywords - Ligandi

ATP-bindingImported, MagnesiumImported, ManganeseImported, Metal-bindingImported, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Submitted name:
VgrG proteinImported
Gene namesi
Name:vgrG-1Imported
Ordered Locus Names:VC0395_A1026Imported, VC395_1535Imported
OrganismiVibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O395)Imported
Taxonomic identifieri345073 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeVibrio
ProteomesiUP000001630: Chromosome I, UP000000249: Chromosome 2

Interactioni

Protein-protein interaction databases

STRINGi345073.VC0395_A1026.

Structurei

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4DTDX-ray2.50A700-1095[»]
4DTFX-ray2.12A700-1095[»]
4DTHX-ray1.78A700-1095[»]
4DTLX-ray2.39A701-1095[»]
4E1CX-ray2.25A700-1095[»]
4E1DX-ray2.49A700-1095[»]
4E1FX-ray2.10A700-1095[»]

Family & Domainsi

Region

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Regioni743 – 7442Sulfate 1 binding
Regioni854 – 8574Sulfate 6 bindingImported
Regioni868 – 8703Sulfate 7 bindingImported
Regioni902 – 9032Sulfate 10 bindingImported

Phylogenomic databases

eggNOGiCOG2931.
HOGENOMiHOG000218180.
KOiK11904.
OMAiLIENDQF.

Family and domain databases

Gene3Di2.40.50.230. 1 hit.
InterProiIPR006531. Gp5_N-like_dom.
IPR017847. T6SS_RhsGE_Vgr_subset.
IPR006533. T6SS_Vgr_RhsGE.
[Graphical view]
PfamiPF04717. Phage_base_V. 1 hit.
[Graphical view]
TIGRFAMsiTIGR01646. vgr_GE. 1 hit.
TIGR03361. VI_Rhs_Vgr. 1 hit.

Sequencei

Sequence statusi: Complete.

A5F8C0-1 [UniParc]FASTAAdd to Basket

« Hide

MATLAYSIEV EGLEDETLVV RGFHGQESLS NSVFLGQACY GFRYEVQLAS     50
RVSNLTAEQM VDKRAELKLY RNSQLVQRVH GIVRAFSQGD IGHHHTFYQL 100
TLVPALERLS LRHNSRIFQK QTVPEILSIL LQEMGINDYA FALKRDGVQR 150
EFCVQYRESD IDFLHRLAAE EGLVYSFVHE AGKHTLYFSD ASDSLSKLPE 200
PIPYNALVGG AIDTPYIHGL TYRTQAEVSE VQLKDYSFKK PAYSFLQTVQ 250
GTELDYQQTR YQHFDAPGRY KDDVNGAAFS QIRLDYLRRH AHTATGQSNE 300
PLLRAGYKFD LQEHLDPAMN RDWVVVSINH QGEQPQALQE DGGSGATTYS 350
NQFSLIPGHL HWRAEPQPKP QVDGPMIATV VGPEGEEIFC DEHGRVKIHF 400
PWDRYSNGNE QSSCWVRVSQ GWAGSQYGFI AIPRIGHEVI VEFLNGDPDQ 450
PIITGRTYHA TNTPPYTLPE HKTKTVLRTE THQGEGFNEL SFEDQAGKEQ 500
IYLHAQKDFD GLIENDQFTQ IKHNQHLTVE WESREAVTGE QVLSIEGSLH 550
VKTGKVRVNE AGTEIHVKAG QKVVIEAGSE ITVKAGGSFV KVDPAGVHLS 600
GALVNLNSGG SAGSGSGFGG AMPALPGGLE PAVALAPPQT ISYQALLQAE 650
QANVPAVKVC PLAAQEATPA VNSITPPPPP PIAPPMAPPQ PIMNPQPTAN 700
AQPNLGRSTK ATPDFPTHFP KSSIGIENEL AGLVVAMPAN SAQKFGYVKS 750
AQGDALFMLT KDMNQGSYQR PPSLQDGKNY QNWQTHTVEL VSYPCEMDDK 800
AAVETRKQAM LWLATHFTTH IDQSNHQPLA PIQSEDGRFV IEITNAKHVI 850
AAGNGISAES QGQTITMTPS GQQATVGVAA KGFGTSATPE LRLLESAPWY 900
QKSLKSQFAS LTSAENLDDK ELAANVFAYL TSIYLKTAEL AKKFGIYINE 950
WDPMSEQITP NANGLTDPKV KNAWEILPRT KPSKIVEILS KSDAKAVMKH 1000
IKPQLQSRYS ESLSKNVFQY FQDGGEVAGH GINNATVGDK HSPELAILFE 1050
FRTVPNELQS YLPKTESTTK SEVKLLDQFD PMKRKTVIQQ VESLV 1095
Length:1,095
Mass (Da):120,779
Last modified:June 12, 2007 - v1
Checksum:i3419E1AF253018FB
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000627 Genomic DNA. Translation: ABQ19866.1.
CP001235 Genomic DNA. Translation: ACP09541.1.
RefSeqiYP_001216972.1. NC_009457.1.
YP_002819777.1. NC_012582.1.

Genome annotation databases

EnsemblBacteriaiABQ19866; ABQ19866; VC0395_A1026.
ACP09541; ACP09541; VC395_1535.
GeneIDi5135888.
7776890.
KEGGivco:VC0395_A1026.
vcr:VC395_1535.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000627 Genomic DNA. Translation: ABQ19866.1 .
CP001235 Genomic DNA. Translation: ACP09541.1 .
RefSeqi YP_001216972.1. NC_009457.1.
YP_002819777.1. NC_012582.1.

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
4DTD X-ray 2.50 A 700-1095 [» ]
4DTF X-ray 2.12 A 700-1095 [» ]
4DTH X-ray 1.78 A 700-1095 [» ]
4DTL X-ray 2.39 A 701-1095 [» ]
4E1C X-ray 2.25 A 700-1095 [» ]
4E1D X-ray 2.49 A 700-1095 [» ]
4E1F X-ray 2.10 A 700-1095 [» ]
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 345073.VC0395_A1026.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ABQ19866 ; ABQ19866 ; VC0395_A1026 .
ACP09541 ; ACP09541 ; VC395_1535 .
GeneIDi 5135888.
7776890.
KEGGi vco:VC0395_A1026.
vcr:VC395_1535.

Phylogenomic databases

eggNOGi COG2931.
HOGENOMi HOG000218180.
KOi K11904.
OMAi LIENDQF.

Family and domain databases

Gene3Di 2.40.50.230. 1 hit.
InterProi IPR006531. Gp5_N-like_dom.
IPR017847. T6SS_RhsGE_Vgr_subset.
IPR006533. T6SS_Vgr_RhsGE.
[Graphical view ]
Pfami PF04717. Phage_base_V. 1 hit.
[Graphical view ]
TIGRFAMsi TIGR01646. vgr_GE. 1 hit.
TIGR03361. VI_Rhs_Vgr. 1 hit.
ProtoNeti Search...

Publicationsi

  1. Heidelberg J.
    Submitted (MAR-2007) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 39541 / Classical Ogawa 395 / O395 and O395Imported.
  2. "A recalibrated molecular clock and independent origins for the cholera pandemic clones."
    Feng L., Reeves P.R., Lan R., Ren Y., Gao C., Zhou Z., Ren Y., Cheng J., Wang W., Wang J., Qian W., Li D., Wang L.
    PLoS ONE 3:E4053-E4053(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 39541 / Classical Ogawa 395 / O395 and O395Imported.

Entry informationi

Entry nameiA5F8C0_VIBC3
AccessioniPrimary (citable) accession number: A5F8C0
Entry historyi
Integrated into UniProtKB/TrEMBL: June 12, 2007
Last sequence update: June 12, 2007
Last modified: June 11, 2014
This is version 46 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureImported, Complete proteome

External Data

Dasty 3

Similar proteinsi