VgrG protein - Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395)

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A5F8C0 (A5F8C0_VIBC3) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 39. History...

Clusters with 100%, 90%, 50% identity |

Third-party data

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Names·Attributes·Ontologies·Sequences·References·Cross-refs·Entry info Customize order

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Names·Attributes·Ontologies·Sequences·References·Cross-refs·Entry info Customize order

Names and origin

Protein names

Submitted name:
VgrG protein EMBL ABQ19866.1

Gene names

Name:	vgrG-1 EMBL ABQ19866.1
Ordered Locus Names:	VC0395_A1026, VC395_1535

Organism

Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) [Complete proteome] [HAMAP]

Taxonomic identifier

Taxonomic lineage

Bacteria › Proteobacteria › Gammaproteobacteria › Vibrionales › Vibrionaceae › Vibrio ›

Protein attributes

Sequence length	1095 AA.
Sequence status	Complete.
Protein existence	Evidence at protein level

Ontologies

Keywords
Technical term	3D-structure PDB 4E1D PDB 4E1F PDB 4DTL PDB 4E1C PDB 4DTH PDB 4DTF PDB 4DTD Complete proteome
Gene Ontology (GO)
None. [Check GOA]

Sequences

Sequence

Length

Mass (Da)

Tools

A5F8C0 [UniParc].

Last modified June 12, 2007. Version 1.
Checksum: 3419E1AF253018FB
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1,095

120,779

        10         20         30         40         50         60 
MATLAYSIEV EGLEDETLVV RGFHGQESLS NSVFLGQACY GFRYEVQLAS RVSNLTAEQM 

        70         80         90        100        110        120 
VDKRAELKLY RNSQLVQRVH GIVRAFSQGD IGHHHTFYQL TLVPALERLS LRHNSRIFQK 

       130        140        150        160        170        180 
QTVPEILSIL LQEMGINDYA FALKRDGVQR EFCVQYRESD IDFLHRLAAE EGLVYSFVHE 

       190        200        210        220        230        240 
AGKHTLYFSD ASDSLSKLPE PIPYNALVGG AIDTPYIHGL TYRTQAEVSE VQLKDYSFKK 

       250        260        270        280        290        300 
PAYSFLQTVQ GTELDYQQTR YQHFDAPGRY KDDVNGAAFS QIRLDYLRRH AHTATGQSNE 

       310        320        330        340        350        360 
PLLRAGYKFD LQEHLDPAMN RDWVVVSINH QGEQPQALQE DGGSGATTYS NQFSLIPGHL 

       370        380        390        400        410        420 
HWRAEPQPKP QVDGPMIATV VGPEGEEIFC DEHGRVKIHF PWDRYSNGNE QSSCWVRVSQ 

       430        440        450        460        470        480 
GWAGSQYGFI AIPRIGHEVI VEFLNGDPDQ PIITGRTYHA TNTPPYTLPE HKTKTVLRTE 

       490        500        510        520        530        540 
THQGEGFNEL SFEDQAGKEQ IYLHAQKDFD GLIENDQFTQ IKHNQHLTVE WESREAVTGE 

       550        560        570        580        590        600 
QVLSIEGSLH VKTGKVRVNE AGTEIHVKAG QKVVIEAGSE ITVKAGGSFV KVDPAGVHLS 

       610        620        630        640        650        660 
GALVNLNSGG SAGSGSGFGG AMPALPGGLE PAVALAPPQT ISYQALLQAE QANVPAVKVC 

       670        680        690        700        710        720 
PLAAQEATPA VNSITPPPPP PIAPPMAPPQ PIMNPQPTAN AQPNLGRSTK ATPDFPTHFP 

       730        740        750        760        770        780 
KSSIGIENEL AGLVVAMPAN SAQKFGYVKS AQGDALFMLT KDMNQGSYQR PPSLQDGKNY 

       790        800        810        820        830        840 
QNWQTHTVEL VSYPCEMDDK AAVETRKQAM LWLATHFTTH IDQSNHQPLA PIQSEDGRFV 

       850        860        870        880        890        900 
IEITNAKHVI AAGNGISAES QGQTITMTPS GQQATVGVAA KGFGTSATPE LRLLESAPWY 

       910        920        930        940        950        960 
QKSLKSQFAS LTSAENLDDK ELAANVFAYL TSIYLKTAEL AKKFGIYINE WDPMSEQITP 

       970        980        990       1000       1010       1020 
NANGLTDPKV KNAWEILPRT KPSKIVEILS KSDAKAVMKH IKPQLQSRYS ESLSKNVFQY 

      1030       1040       1050       1060       1070       1080 
FQDGGEVAGH GINNATVGDK HSPELAILFE FRTVPNELQS YLPKTESTTK SEVKLLDQFD 

      1090 
PMKRKTVIQQ VESLV

References

[1]	Heidelberg J. Submitted (MAR-2007) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 39541 / Ogawa 395 / O395 [TIGR].
[2]	"A recalibrated molecular clock and independent origins for the cholera pandemic clones." Feng L., Reeves P.R., Lan R., Ren Y., Gao C., Zhou Z., Ren Y., Cheng J., Wang W., Wang J., Qian W., Li D., Wang L. PLoS ONE 3:E4053-E4053(2008) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 39541 / Ogawa 395 / O395 [Nankai/TEDA].

Cross-references

Sequence databases

EMBL
GenBank
DDBJ

CP000627 Genomic DNA. Translation: ABQ19866.1.
CP001235 Genomic DNA. Translation: ACP09541.1.

RefSeq

YP_001216972.1. NC_009457.1.
YP_002819777.1. NC_012582.1.

3D structure databases

PDBe
RCSB PDB
PDBj

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
4DTD	X-ray	2.50	A	700-1095	[»]
4DTF	X-ray	2.12	A	700-1095	[»]
4DTH	X-ray	1.78	A	700-1095	[»]
4DTL	X-ray	2.39	A	701-1095	[»]
4E1C	X-ray	2.25	A	700-1095	[»]
4E1D	X-ray	2.49	A	700-1095	[»]
4E1F	X-ray	2.10	A	700-1095	[»]

ModBase

Protein-protein interaction databases

STRING

345073.VC0395_A1026.

Protocols and materials databases

StructuralBiologyKnowledgebase

Genome annotation databases

EnsemblBacteria

ABQ19866; ABQ19866; VC0395_A1026.
ACP09541; ACP09541; VC395_1535.

GeneID

5135888.
7776890.

KEGG

vco:VC0395_A1026.
vcr:VC395_1535.

Organism-specific databases

CMR

Phylogenomic databases

eggNOG

HOGENOM

KO

OMA

ProtClustDB

Family and domain databases

Gene3D

2.40.50.230. 1 hit.

InterPro

IPR006531. Gp5_N-like_dom.
IPR006533. Rhs_Vgr.
IPR017847. T6SS_Rhs-element_Vgr.
[Graphical view]

Pfam

PF04717. Phage_base_V. 1 hit.
[Graphical view]

TIGRFAMs

TIGR01646. vgr_GE. 1 hit.
TIGR03361. VI_Rhs_Vgr. 1 hit.

ProtoNet

Entry information

Entry name

A5F8C0_VIBC3

Accession

Primary (citable) accession number: A5F8C0

Entry history

Integrated into UniProtKB/TrEMBL:	June 12, 2007
Last sequence update:	June 12, 2007
Last modified:	May 1, 2013
This is version 39 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)

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Names·Attributes·Ontologies·Sequences·References·Cross-refs·Entry info