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Protein
Submitted name:

VgrG protein

Gene

vgrG-1

Organism
Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O395)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Binding sitei715 – 7151ADPCombined sources
Binding sitei723 – 7231ATP analogCombined sources
Metal bindingi727 – 7271MagnesiumCombined sources
Metal bindingi727 – 7271ManganeseCombined sources
Binding sitei792 – 7921ADP; via carbonyl oxygenCombined sources
Binding sitei792 – 7921ATP analog; via carbonyl oxygenCombined sources
Binding sitei792 – 7921ATP; via carbonyl oxygenCombined sources
Metal bindingi873 – 8731MagnesiumCombined sources
Metal bindingi873 – 8731ManganeseCombined sources
Binding sitei979 – 9791ADPCombined sources
Binding sitei979 – 9791ATPCombined sources
Metal bindingi1050 – 10501MagnesiumCombined sources
Metal bindingi1050 – 10501ManganeseCombined sources

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Nucleotide bindingi723 – 7275ADPCombined sources
Nucleotide bindingi723 – 7275ATPCombined sources

GO - Molecular functioni

  1. ATP binding Source: UniProtKB-KW
  2. metal ion binding Source: UniProtKB-KW
Complete GO annotation...

Keywords - Ligandi

ATP-bindingCombined sources, MagnesiumCombined sources, ManganeseCombined sources, Metal-bindingCombined sources, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Submitted name:
VgrG proteinImported
Gene namesi
Name:vgrG-1Imported
Ordered Locus Names:VC0395_A1026Imported, VC395_1535Imported
OrganismiVibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O395)Imported
Taxonomic identifieri345073 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeVibrio
ProteomesiUP000000249 Componenti: Chromosome 2 UP000001630 Componenti: Chromosome I

Interactioni

Protein-protein interaction databases

STRINGi345073.VC0395_A1026.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4DTDX-ray2.50A700-1095[»]
4DTFX-ray2.12A700-1095[»]
4DTHX-ray1.78A700-1095[»]
4DTLX-ray2.39A701-1095[»]
4E1CX-ray2.25A700-1095[»]
4E1DX-ray2.49A700-1095[»]
4E1FX-ray2.10A700-1095[»]
ProteinModelPortaliA5F8C0.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG2931.
HOGENOMiHOG000218180.
KOiK11904.
OMAiLIENDQF.

Family and domain databases

Gene3Di2.40.50.230. 1 hit.
InterProiIPR006531. Gp5_N-like_dom.
IPR017847. T6SS_RhsGE_Vgr_subset.
IPR006533. T6SS_Vgr_RhsGE.
[Graphical view]
PfamiPF04717. Phage_base_V. 1 hit.
[Graphical view]
TIGRFAMsiTIGR01646. vgr_GE. 1 hit.
TIGR03361. VI_Rhs_Vgr. 1 hit.

Sequencei

Sequence statusi: Complete.

A5F8C0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MATLAYSIEV EGLEDETLVV RGFHGQESLS NSVFLGQACY GFRYEVQLAS
60 70 80 90 100
RVSNLTAEQM VDKRAELKLY RNSQLVQRVH GIVRAFSQGD IGHHHTFYQL
110 120 130 140 150
TLVPALERLS LRHNSRIFQK QTVPEILSIL LQEMGINDYA FALKRDGVQR
160 170 180 190 200
EFCVQYRESD IDFLHRLAAE EGLVYSFVHE AGKHTLYFSD ASDSLSKLPE
210 220 230 240 250
PIPYNALVGG AIDTPYIHGL TYRTQAEVSE VQLKDYSFKK PAYSFLQTVQ
260 270 280 290 300
GTELDYQQTR YQHFDAPGRY KDDVNGAAFS QIRLDYLRRH AHTATGQSNE
310 320 330 340 350
PLLRAGYKFD LQEHLDPAMN RDWVVVSINH QGEQPQALQE DGGSGATTYS
360 370 380 390 400
NQFSLIPGHL HWRAEPQPKP QVDGPMIATV VGPEGEEIFC DEHGRVKIHF
410 420 430 440 450
PWDRYSNGNE QSSCWVRVSQ GWAGSQYGFI AIPRIGHEVI VEFLNGDPDQ
460 470 480 490 500
PIITGRTYHA TNTPPYTLPE HKTKTVLRTE THQGEGFNEL SFEDQAGKEQ
510 520 530 540 550
IYLHAQKDFD GLIENDQFTQ IKHNQHLTVE WESREAVTGE QVLSIEGSLH
560 570 580 590 600
VKTGKVRVNE AGTEIHVKAG QKVVIEAGSE ITVKAGGSFV KVDPAGVHLS
610 620 630 640 650
GALVNLNSGG SAGSGSGFGG AMPALPGGLE PAVALAPPQT ISYQALLQAE
660 670 680 690 700
QANVPAVKVC PLAAQEATPA VNSITPPPPP PIAPPMAPPQ PIMNPQPTAN
710 720 730 740 750
AQPNLGRSTK ATPDFPTHFP KSSIGIENEL AGLVVAMPAN SAQKFGYVKS
760 770 780 790 800
AQGDALFMLT KDMNQGSYQR PPSLQDGKNY QNWQTHTVEL VSYPCEMDDK
810 820 830 840 850
AAVETRKQAM LWLATHFTTH IDQSNHQPLA PIQSEDGRFV IEITNAKHVI
860 870 880 890 900
AAGNGISAES QGQTITMTPS GQQATVGVAA KGFGTSATPE LRLLESAPWY
910 920 930 940 950
QKSLKSQFAS LTSAENLDDK ELAANVFAYL TSIYLKTAEL AKKFGIYINE
960 970 980 990 1000
WDPMSEQITP NANGLTDPKV KNAWEILPRT KPSKIVEILS KSDAKAVMKH
1010 1020 1030 1040 1050
IKPQLQSRYS ESLSKNVFQY FQDGGEVAGH GINNATVGDK HSPELAILFE
1060 1070 1080 1090
FRTVPNELQS YLPKTESTTK SEVKLLDQFD PMKRKTVIQQ VESLV
Length:1,095
Mass (Da):120,779
Last modified:June 12, 2007 - v1
Checksum:i3419E1AF253018FB
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000627 Genomic DNA. Translation: ABQ19866.1.
CP001235 Genomic DNA. Translation: ACP09541.1.
RefSeqiYP_001216972.1. NC_009457.1.
YP_002819777.1. NC_012582.1.

Genome annotation databases

EnsemblBacteriaiABQ19866; ABQ19866; VC0395_A1026.
ACP09541; ACP09541; VC395_1535.
KEGGivco:VC0395_A1026.
vcr:VC395_1535.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000627 Genomic DNA. Translation: ABQ19866.1.
CP001235 Genomic DNA. Translation: ACP09541.1.
RefSeqiYP_001216972.1. NC_009457.1.
YP_002819777.1. NC_012582.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4DTDX-ray2.50A700-1095[»]
4DTFX-ray2.12A700-1095[»]
4DTHX-ray1.78A700-1095[»]
4DTLX-ray2.39A701-1095[»]
4E1CX-ray2.25A700-1095[»]
4E1DX-ray2.49A700-1095[»]
4E1FX-ray2.10A700-1095[»]
ProteinModelPortaliA5F8C0.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi345073.VC0395_A1026.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABQ19866; ABQ19866; VC0395_A1026.
ACP09541; ACP09541; VC395_1535.
KEGGivco:VC0395_A1026.
vcr:VC395_1535.

Phylogenomic databases

eggNOGiCOG2931.
HOGENOMiHOG000218180.
KOiK11904.
OMAiLIENDQF.

Family and domain databases

Gene3Di2.40.50.230. 1 hit.
InterProiIPR006531. Gp5_N-like_dom.
IPR017847. T6SS_RhsGE_Vgr_subset.
IPR006533. T6SS_Vgr_RhsGE.
[Graphical view]
PfamiPF04717. Phage_base_V. 1 hit.
[Graphical view]
TIGRFAMsiTIGR01646. vgr_GE. 1 hit.
TIGR03361. VI_Rhs_Vgr. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. Heidelberg J.
    Submitted (MAR-2007) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 39541 / Classical Ogawa 395 / O395Imported and O395Imported.
  2. "A recalibrated molecular clock and independent origins for the cholera pandemic clones."
    Feng L., Reeves P.R., Lan R., Ren Y., Gao C., Zhou Z., Ren Y., Cheng J., Wang W., Wang J., Qian W., Li D., Wang L.
    PLoS ONE 3:E4053-E4053(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 39541 / Classical Ogawa 395 / O395Imported and O395Imported.

Entry informationi

Entry nameiA5F8C0_VIBC3
AccessioniPrimary (citable) accession number: A5F8C0
Entry historyi
Integrated into UniProtKB/TrEMBL: June 12, 2007
Last sequence update: June 12, 2007
Last modified: April 29, 2015
This is version 54 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.