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A5F7Z9

- A5F7Z9_VIBC3

UniProt

A5F7Z9 - A5F7Z9_VIBC3

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Protein
Submitted name:

DNA ligase

Gene

ligA-2

Organism
Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O395)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: UniProtKB-EC

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligaseImported (EC:6.5.1.1Imported)
Gene namesi
Name:ligA-2Imported
Ordered Locus Names:VC0395_A1148Imported, VC395_1659Imported
OrganismiVibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O395)Imported
Taxonomic identifieri345073 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeVibrio
ProteomesiUP000000249: Chromosome 2, UP000001630: Chromosome I

Interactioni

Protein-protein interaction databases

STRINGi345073.VC0395_A1148.

Structurei

3D structure databases

ProteinModelPortaliA5F7Z9.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000293070.
KOiK01971.
OMAiGKGQFEN.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR029319. DNA_ligase_OB.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
PF14743. DNA_ligase_OB_2. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A5F7Z9-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MLIRLTLTAA AIMLAQQTLA NDGPLAFIPI TYANNYQHGI DIFDYWKSEK
60 70 80 90 100
LDGIRAIWTG KQLVTRNGNP IAAPAWFTES LPSYSLEGEL WAGRGNFSLV
110 120 130 140 150
QQTVLDSQPA DSAWRKISLM LFDMPDAAGD YSKRYYNLIH LVNSLDLKHI
160 170 180 190 200
RYVEHTPIKS EAELLSYLDN ISEKSGEGVM LRKISARYQA GRSNDLLKLK
210 220 230 240 250
RHQDAEATVI GYRLGMGKYK GKMGSMLVRT AEGLEFYIGS GFSDVERAEP
260 270 280
PKIGSVITYR YNGLTTEGKP RFARFVRVRE NY
Length:282
Mass (Da):31,815
Last modified:June 12, 2007 - v1
Checksum:iE3E5F1D90D43EFDA
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000627 Genomic DNA. Translation: ABQ20588.1.
CP001235 Genomic DNA. Translation: ACP09664.1.
RefSeqiYP_001217094.1. NC_009457.1.
YP_002819900.1. NC_012582.1.

Genome annotation databases

EnsemblBacteriaiABQ20588; ABQ20588; VC0395_A1148.
ACP09664; ACP09664; VC395_1659.
GeneIDi5136188.
7775546.
KEGGivco:VC0395_A1148.
vcr:VC395_1659.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000627 Genomic DNA. Translation: ABQ20588.1 .
CP001235 Genomic DNA. Translation: ACP09664.1 .
RefSeqi YP_001217094.1. NC_009457.1.
YP_002819900.1. NC_012582.1.

3D structure databases

ProteinModelPortali A5F7Z9.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 345073.VC0395_A1148.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ABQ20588 ; ABQ20588 ; VC0395_A1148 .
ACP09664 ; ACP09664 ; VC395_1659 .
GeneIDi 5136188.
7775546.
KEGGi vco:VC0395_A1148.
vcr:VC395_1659.

Phylogenomic databases

eggNOGi COG1793.
HOGENOMi HOG000293070.
KOi K01971.
OMAi GKGQFEN.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR029319. DNA_ligase_OB.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF01068. DNA_ligase_A_M. 1 hit.
PF14743. DNA_ligase_OB_2. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
PROSITEi PS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Heidelberg J.
    Submitted (MAR-2007) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 39541 / Classical Ogawa 395 / O395Imported and O395Imported.
  2. "A recalibrated molecular clock and independent origins for the cholera pandemic clones."
    Feng L., Reeves P.R., Lan R., Ren Y., Gao C., Zhou Z., Ren Y., Cheng J., Wang W., Wang J., Qian W., Li D., Wang L.
    PLoS ONE 3:E4053-E4053(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 39541 / Classical Ogawa 395 / O395 and O395Imported.

Entry informationi

Entry nameiA5F7Z9_VIBC3
AccessioniPrimary (citable) accession number: A5F7Z9
Entry historyi
Integrated into UniProtKB/TrEMBL: June 12, 2007
Last sequence update: June 12, 2007
Last modified: October 29, 2014
This is version 47 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3