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A5F7Z9

- A5F7Z9_VIBC3

UniProt

A5F7Z9 - A5F7Z9_VIBC3

Protein
Submitted name:

DNA ligase

Gene

ligA-2

Organism
Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O395)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 46 (01 Oct 2014)
      Sequence version 1 (12 Jun 2007)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: UniProtKB-EC

    GO - Biological processi

    1. DNA ligation involved in DNA repair Source: InterPro
    2. DNA recombination Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    DNA ligaseImported (EC:6.5.1.1Imported)
    Gene namesi
    Name:ligA-2Imported
    Ordered Locus Names:VC0395_A1148Imported, VC395_1659Imported
    OrganismiVibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O395)Imported
    Taxonomic identifieri345073 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeVibrio
    ProteomesiUP000000249: Chromosome 2, UP000001630: Chromosome I

    Interactioni

    Protein-protein interaction databases

    STRINGi345073.VC0395_A1148.

    Structurei

    3D structure databases

    ProteinModelPortaliA5F7Z9.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    eggNOGiCOG1793.
    HOGENOMiHOG000293070.
    KOiK01971.
    OMAiGKGQFEN.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR029319. DNA_ligase_OB.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF01068. DNA_ligase_A_M. 1 hit.
    PF14743. DNA_ligase_OB_2. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    PROSITEiPS00333. DNA_LIGASE_A2. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    A5F7Z9-1 [UniParc]FASTAAdd to Basket

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    MLIRLTLTAA AIMLAQQTLA NDGPLAFIPI TYANNYQHGI DIFDYWKSEK    50
    LDGIRAIWTG KQLVTRNGNP IAAPAWFTES LPSYSLEGEL WAGRGNFSLV 100
    QQTVLDSQPA DSAWRKISLM LFDMPDAAGD YSKRYYNLIH LVNSLDLKHI 150
    RYVEHTPIKS EAELLSYLDN ISEKSGEGVM LRKISARYQA GRSNDLLKLK 200
    RHQDAEATVI GYRLGMGKYK GKMGSMLVRT AEGLEFYIGS GFSDVERAEP 250
    PKIGSVITYR YNGLTTEGKP RFARFVRVRE NY 282
    Length:282
    Mass (Da):31,815
    Last modified:June 12, 2007 - v1
    Checksum:iE3E5F1D90D43EFDA
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000627 Genomic DNA. Translation: ABQ20588.1.
    CP001235 Genomic DNA. Translation: ACP09664.1.
    RefSeqiYP_001217094.1. NC_009457.1.
    YP_002819900.1. NC_012582.1.

    Genome annotation databases

    EnsemblBacteriaiABQ20588; ABQ20588; VC0395_A1148.
    ACP09664; ACP09664; VC395_1659.
    GeneIDi5136188.
    7775546.
    KEGGivco:VC0395_A1148.
    vcr:VC395_1659.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000627 Genomic DNA. Translation: ABQ20588.1 .
    CP001235 Genomic DNA. Translation: ACP09664.1 .
    RefSeqi YP_001217094.1. NC_009457.1.
    YP_002819900.1. NC_012582.1.

    3D structure databases

    ProteinModelPortali A5F7Z9.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 345073.VC0395_A1148.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ABQ20588 ; ABQ20588 ; VC0395_A1148 .
    ACP09664 ; ACP09664 ; VC395_1659 .
    GeneIDi 5136188.
    7775546.
    KEGGi vco:VC0395_A1148.
    vcr:VC395_1659.

    Phylogenomic databases

    eggNOGi COG1793.
    HOGENOMi HOG000293070.
    KOi K01971.
    OMAi GKGQFEN.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR029319. DNA_ligase_OB.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF01068. DNA_ligase_A_M. 1 hit.
    PF14743. DNA_ligase_OB_2. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    PROSITEi PS00333. DNA_LIGASE_A2. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Heidelberg J.
      Submitted (MAR-2007) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 39541 / Classical Ogawa 395 / O395Imported and O395Imported.
    2. "A recalibrated molecular clock and independent origins for the cholera pandemic clones."
      Feng L., Reeves P.R., Lan R., Ren Y., Gao C., Zhou Z., Ren Y., Cheng J., Wang W., Wang J., Qian W., Li D., Wang L.
      PLoS ONE 3:E4053-E4053(2008) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 39541 / Classical Ogawa 395 / O395 and O395Imported.

    Entry informationi

    Entry nameiA5F7Z9_VIBC3
    AccessioniPrimary (citable) accession number: A5F7Z9
    Entry historyi
    Integrated into UniProtKB/TrEMBL: June 12, 2007
    Last sequence update: June 12, 2007
    Last modified: October 1, 2014
    This is version 46 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3