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Protein
Submitted name:

Response regulator VieA

Gene

vieA

Organism
Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O395)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. DNA binding Source: UniProtKB-KW
  2. sequence-specific DNA binding transcription factor activity Source: InterPro

GO - Biological processi

  1. phosphorelay signal transduction system Source: InterPro
  2. transcription, DNA-templated Source: UniProtKB-KW
Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulationSAAS annotation

Keywords - Ligandi

DNA-bindingSAAS annotation

Names & Taxonomyi

Protein namesi
Submitted name:
Response regulator VieAImported
Gene namesi
Name:vieAImported
Ordered Locus Names:VC0395_A1258Imported, VC395_1769Imported
OrganismiVibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O395)Imported
Taxonomic identifieri345073 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeVibrio
ProteomesiUP000000249 Componenti: Chromosome 2 UP000001630 Componenti: Chromosome I

Interactioni

Protein-protein interaction databases

IntActiA5F7M6. 1 interaction.
STRINGi345073.VC0395_A1258.

Family & Domainsi

Sequence similaritiesi

Contains HTH luxR-type DNA-binding domain.SAAS annotation
Contains response regulatory domain.SAAS annotation

Phylogenomic databases

eggNOGiCOG2204.
HOGENOMiHOG000218159.
KOiK13246.
OMAiGEDHFLE.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
3.20.20.450. 1 hit.
InterProiIPR011006. CheY-like_superfamily.
IPR001633. EAL_dom.
IPR016032. Sig_transdc_resp-reg_C-effctor.
IPR001789. Sig_transdc_resp-reg_receiver.
IPR000792. Tscrpt_reg_LuxR_C.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00563. EAL. 1 hit.
PF00196. GerE. 1 hit.
PF00072. Response_reg. 1 hit.
[Graphical view]
PRINTSiPR00038. HTHLUXR.
SMARTiSM00052. EAL. 1 hit.
SM00421. HTH_LUXR. 1 hit.
SM00448. REC. 1 hit.
[Graphical view]
SUPFAMiSSF141868. SSF141868. 1 hit.
SSF46894. SSF46894. 1 hit.
SSF52172. SSF52172. 1 hit.
PROSITEiPS50883. EAL. 1 hit.
PS00622. HTH_LUXR_1. 1 hit.
PS50043. HTH_LUXR_2. 1 hit.
PS50110. RESPONSE_REGULATORY. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A5F7M6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKIMIVEDDR IQATSLKLKL RQLGLDDVIL AENGFAALEL CNKVGIDLMF
60 70 80 90 100
CDIRMPQMDG ISLLSQLSLQ APKLGVVILS AVEDTILELT HNMCSLAGFA
110 120 130 140 150
YVDRLPKPYE VEDLQRVVEG FQKQTEPETS HKPAITLTCD EIEQAFLHDH
160 170 180 190 200
IFNYYQPQFD FRSGAMVGVE ALVRYEHPTH GMLSPAVFLP LIEQCGLHEK
210 220 230 240 250
LFLTVLEKSV SALASIGADL QLSVNISQRN LQHSICDPIL AICERYGFPA
260 270 280 290 300
SKLTLEMTEH EVYNRTPTSL ANLARLRMYG VGLSIDDFGT GYASLGQLAQ
310 320 330 340 350
LPFTELKIDR SFVHDLATNY KHQQLTNMCL LLAQSLGLHC VVEGVENEET
360 370 380 390 400
WQYLRQLGVD TCQGYYAAKP MPIAQLSELY TKNRRQCLGC QSMDDGWQIL
410 420 430 440 450
LVDNHMLSAT ALQKVLNKEE NVSKVFVAQD IEQTLHKLRD LPINLLVVES
460 470 480 490 500
RFLSTISPAA FHELLEPYYR GALLVLHDGL TAEAQEDEPK AIVVKANTLM
510 520 530 540 550
ETSSRILLQA QQSNVRPQAQ QEELAQLSER ELTVAKMLVE GLTNKEIALQ
560 570 580
LDINQKTVST YKTRIMTKLG IKSAMELVRF VTLK
Length:584
Mass (Da):65,564
Last modified:June 11, 2007 - v1
Checksum:i7E31E5AEBDA85443
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000627 Genomic DNA. Translation: ABQ21552.1.
CP001235 Genomic DNA. Translation: ACP09769.1.
RefSeqiYP_001217202.1. NC_009457.1.
YP_002820005.1. NC_012582.1.

Genome annotation databases

EnsemblBacteriaiABQ21552; ABQ21552; VC0395_A1258.
ACP09769; ACP09769; VC395_1769.
GeneIDi5137267.
7775638.
KEGGivco:VC0395_A1258.
vcr:VC395_1769.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000627 Genomic DNA. Translation: ABQ21552.1.
CP001235 Genomic DNA. Translation: ACP09769.1.
RefSeqiYP_001217202.1. NC_009457.1.
YP_002820005.1. NC_012582.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

IntActiA5F7M6. 1 interaction.
STRINGi345073.VC0395_A1258.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABQ21552; ABQ21552; VC0395_A1258.
ACP09769; ACP09769; VC395_1769.
GeneIDi5137267.
7775638.
KEGGivco:VC0395_A1258.
vcr:VC395_1769.

Phylogenomic databases

eggNOGiCOG2204.
HOGENOMiHOG000218159.
KOiK13246.
OMAiGEDHFLE.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
3.20.20.450. 1 hit.
InterProiIPR011006. CheY-like_superfamily.
IPR001633. EAL_dom.
IPR016032. Sig_transdc_resp-reg_C-effctor.
IPR001789. Sig_transdc_resp-reg_receiver.
IPR000792. Tscrpt_reg_LuxR_C.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00563. EAL. 1 hit.
PF00196. GerE. 1 hit.
PF00072. Response_reg. 1 hit.
[Graphical view]
PRINTSiPR00038. HTHLUXR.
SMARTiSM00052. EAL. 1 hit.
SM00421. HTH_LUXR. 1 hit.
SM00448. REC. 1 hit.
[Graphical view]
SUPFAMiSSF141868. SSF141868. 1 hit.
SSF46894. SSF46894. 1 hit.
SSF52172. SSF52172. 1 hit.
PROSITEiPS50883. EAL. 1 hit.
PS00622. HTH_LUXR_1. 1 hit.
PS50043. HTH_LUXR_2. 1 hit.
PS50110. RESPONSE_REGULATORY. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Heidelberg J.
    Submitted (FEB-2007) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 39541 / Classical Ogawa 395 / O395Imported and O395Imported.
  2. "A recalibrated molecular clock and independent origins for the cholera pandemic clones."
    Feng L., Reeves P.R., Lan R., Ren Y., Gao C., Zhou Z., Ren Y., Cheng J., Wang W., Wang J., Qian W., Li D., Wang L.
    PLoS ONE 3:E4053-E4053(2007) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 39541 / Classical Ogawa 395 / O395 and O395Imported.

Entry informationi

Entry nameiA5F7M6_VIBC3
AccessioniPrimary (citable) accession number: A5F7M6
Entry historyi
Integrated into UniProtKB/TrEMBL: June 11, 2007
Last sequence update: June 11, 2007
Last modified: March 31, 2015
This is version 62 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.